New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5480390 =	46 (0.910)	4 (0.080)	3/244	NT	8.1%	coding (914/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	5480474 =	47 (0.990)					intergenic (+5/‑38)	prmA/PP_4819	ribosomal protein L11 methyltransferase/hypothetical protein

CCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGT  >  NC_002947/5480245‑5480536                                                                                                                                                  |                                                                                                                                                     ccGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCcgccg‑c                                                                                                                                                  >  6:64483/1‑149 (MQ=255)   ggCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑Ctt                                                                                                                                                <  8:786/149‑1 (MQ=255)    gCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTa                                                                                                                                               <  6:19628/149‑1 (MQ=255)      gATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATg                                                                                                                                             <  7:283506/149‑1 (MQ=255)           aGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATgccgcc                                                                                                                                        >  7:276947/1‑149 (MQ=255)             gCCGACGTGCTGGTTGCCAGCATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGa                                                                                                                                      >  5:35254/1‑149 (MQ=255)                   gTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTg                                                                                                                                 >  2:233020/1‑148 (MQ=255)                         gTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGa                                                                                                                          >  1:213181/1‑149 (MQ=255)                          cacgggccacgcccaactggtggtgggtgacgcgaaagctggtctggcaatgcgggcactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTa                                                                                                                                               >  4:274495‑M1/121‑127 (MQ=255)                          cacgggccacgcccaactggtggtgggtgacgcgaaagctggtctggcaatgcgggcactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTa                                                                                                                                               <  3:274495‑M1/7‑1 (MQ=255)                              cAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGa                                                                                                                     >  2:145094/1‑149 (MQ=255)                              cAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGa                                                                                                                     >  5:165768/1‑149 (MQ=255)                                  aTCCTCGCCGGGCCGGTTGTGTCGCTTGCGGCACATTTGTCCGGCCTGGTTCGCCCAGGTGGGCTGCTGGCGCTTTAGGTCATCCTTGGCGTTCAAGGTGAAGACGTTGCCGCCGCCTTATGCCGCCGACTTTGAACTGGACCCGAtcg                                                                                                                  <  1:39067/149‑1 (MQ=255)                                      tCGCCGGCCCGCTGGTGTCGCTGGCACCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTg                                                                                                             >  5:88672/1‑149 (MQ=255)                                         ccGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGTTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTgcgc                                                                                                          <  8:36319/149‑1 (MQ=255)                                              ccGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACgg                                                                                                    >  4:195008/1‑149 (MQ=255)                                                gCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGCGCacg‑acgatc                                                                                                  <  5:127801/149‑4 (MQ=255)                                                 cTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTg                                                                                                 >  1:211971/1‑149 (MQ=255)                                                    gtgtCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGt                                                                                              >  2:275168/1‑149 (MQ=255)                                                       tCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTgcg                                                                                                           <  1:100831/134‑1 (MQ=255)                                                       tCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTgcg                                                                                                           >  2:100831/1‑134 (MQ=255)                                                       tCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTgc                                                                                            <  5:256770/148‑1 (MQ=255)                                                               gcCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTgc                                                                                            >  5:99059/1‑140 (MQ=255)                                                               gcCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTgc                                                                                            <  6:99059/140‑1 (MQ=255)                                                               gcCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTg                                                                                   >  1:175391/1‑149 (MQ=255)                                                                 cacaGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGt                                                                                 <  6:171870/149‑1 (MQ=255)                                                                  acaGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTc                                                                                >  4:312336/1‑149 (MQ=255)                                                                    aGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCgg                                                                              >  3:112331/1‑149 (MQ=255)                                                                     gTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGc                                                                             <  5:40377/149‑1 (MQ=255)                                                                        gcaatgcgggcactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTc                                                                          <  3:91446‑M1/75‑1 (MQ=255)                                                                            ggCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCt                                                                       >  1:222299/1‑148 (MQ=255)                                                                              ccTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAg                                                                    >  2:264902/1‑149 (MQ=255)                                                                               gggcactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGc                                                                   >  4:91446‑M1/68‑149 (MQ=255)                                                                               gggcactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGc                                                                   >  5:148437‑M1/68‑149 (MQ=255)                                                                                  cactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCggg                                                                >  5:168962‑M1/65‑149 (MQ=255)                                                                                      gCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTa                                                            <  3:312336/149‑1 (MQ=255)                                                                                         cAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGaa                                                         <  3:195008/149‑1 (MQ=255)                                                                                           ggTGGCCTGCTGGCGCTTTCGGGCATCCCCGGCGAGCCAGGGGAAGACCTGGCCGCCG‑CTTAAGCCCCCGCCTTTGAACTGGACCCCCTCGGCCTGCGCGCCCGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAAt                                                        <  1:233020/149‑1 (MQ=255)                                                                                              ggCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                    <  4:55739/149‑1 (MQ=255)                                                                                               gCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                    <  8:276947/148‑1 (MQ=255)                                                                                               gCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                    <  6:35254/148‑1 (MQ=255)                                                                                                 ctgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTc                                                 >  5:87103/1‑149 (MQ=255)                                                                                                    ctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCt                                                <  2:211971/147‑1 (MQ=255)                                                                                                       gcgcTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGcaca                                           <  1:145094/149‑1 (MQ=255)                                                                                                           tttCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAg                                                                                     >  1:1322/1‑103 (MQ=255)                                                                                                           tttCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAg                                                                                     <  2:1322/103‑1 (MQ=255)                                                                                                           tttCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTc                                       >  5:81061/1‑149 (MQ=255)                                                                                                                         gCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCAt                         <  6:81061/149‑1 (MQ=255)                                                                                                                                 aGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACa                 <  6:87103/149‑1 (MQ=255)                                                                                                                                      aaGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTc            >  2:156340/1‑149 (MQ=255)                                                                                                                                      aaGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGAAGCATGACCGACAATTTc            >  6:226801/1‑149 (MQ=255)                                                                                                                                           gTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAc       <  2:222299/149‑1 (MQ=255)                                                                                                                                            tGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAcc      <  5:64483/149‑1 (MQ=255)                                                                                                                                              gccgccG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCa    <  4:112331/149‑1 (MQ=255)                                                                                                                                                cgccg‑cTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGt  <  2:175391/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCG‑CTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGT  >  NC_002947/5480245‑5480536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.