New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5933742 =	32 (0.640)	3 (0.060)	3/248	NT	8.9%	coding (235/555 nt)	PP_5201	hypothetical protein
	?	NC_002947	5933781 =	31 (0.640)					coding (196/555 nt)	PP_5201	hypothetical protein

CCTGCTGATTGGCCGCAGCTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5933890‑5933742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccaAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC  >  NC_002947/5933781‑5933927                                                                                                                                                                                                                                                                                                          CCTGCTGATTGGCCGCAGCTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCA                                                                                                                                                     <  3:187936/149‑1  aTGCTGATTGGCCGCAGCTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCAGCCCAACAGCTGGAAATCGAGCCTGGTGAAAGTGTCCGCAATGCCTTGGTAGGCTAGCAGGAAATGGTCAAGGGCGAGCTGAC                                                                                                                                                       >  6:233139/2‑146  CTGCTGATTGGCCGCAGCTGCGCCGTCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGTTAATCGAGCCTGTTGACAGTGTCCTCAATGCCTTGTTCTGCTTGCAGGAAATGGTCTAGGGCGAGCTGACCA                                                                                                                                                     <  5:233139/148‑1  CTGCTGATTGGCCGCAGCTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGAC                                                                                                                                                       >  4:187936/1‑146                   CTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCA                                                                                                                                                     <  1:13699/131‑1                   CTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCA                                                                                                                                                     >  2:13699/1‑131                                                                                                             CTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAG                                           >  7:139973/1‑147                                                                                                              TTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAA                                                                         <  5:8248/116‑1                                                                                                              TTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAA                                                                         >  6:8248/1‑116                                                                                                                                                    CAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC  >  6:136576/1‑149                                                                                                                                                    CAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC  >  6:193330/1‑149                                                                                                                                                                                                                                                                                                          CCTGCTGATTGGCCGCAGCTGCGCCGGCGCCGGCTTCGATGCCGATGCCTGGTTGGCCGATGCCGCCCAACTGCTGGAAATCGAGCCTGGTGACAGTGTCCGCAATGCCTTGGTCGGCTTGCAGGAAATGGTCAAGGGCGAGCTGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5933890‑5933742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccaAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC  >  NC_002947/5933781‑5933927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.