| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5933742 = | 32 (0.640) | 3 (0.060) | 3/248 | NT | 8.9% | coding (235/555 nt) | PP_5201 | hypothetical protein |
| ? | NC_002947 | 5933781 = | 31 (0.640) | coding (196/555 nt) | PP_5201 | hypothetical protein | |||||
AGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC > NC_002947/5933633‑5933927 | aGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa < 1:59352/149‑1 (MQ=255) ggCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg > 8:229100/1‑149 (MQ=255) ggCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg > 7:135461/1‑149 (MQ=255) ctgattggccgcagctgcgccggcgccggcttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg > 7:139973‑M1/107‑147 (MQ=255) cGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCa > 4:157201/1‑149 (MQ=255) aaCCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTg < 6:120212/149‑1 (MQ=255) ggTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGa < 7:229100/149‑1 (MQ=255) tCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTAGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGaca < 8:135461/149‑1 (MQ=255) aCGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACCCt > 4:94814/1‑149 (MQ=255) aGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCa < 5:103157/149‑1 (MQ=255) caccacTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTc > 7:83796/1‑149 (MQ=255) ttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa > 6:8248‑M1/77‑116 (MQ=255) ttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa < 5:8248‑M1/40‑1 (MQ=255) gCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCca < 3:157201/149‑1 (MQ=255) gcgcGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGt < 8:83796/149‑1 (MQ=255) gTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGggc > 1:161955/1‑149 (MQ=255) cTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCaa > 6:76338/1‑149 (MQ=255) cagcaTCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAggca > 5:22202/1‑149 (MQ=255) gTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGgcatcggcatcgca > 4:279842/1‑147 (MQ=255) cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGc < 1:48083/120‑1 (MQ=255) cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGc > 2:48083/1‑120 (MQ=255) cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAGgccggcgc < 7:187591/149‑1 (MQ=255) tCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCGAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCCTCGAAGCCGGCGCCGGCGCAGCTg > 1:229989/1‑149 (MQ=255) gCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGTCGGCGCCGGCGCAGCTGCGGCCAATcagca < 5:280490/149‑1 (MQ=255) cttggtcggcttgcaggaaatggtcaagggcgagctgaccaAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATcag > 7:139973‑M2/42‑147 (MQ=255) ttggtcggcttgcaggaaatggtcaagggcgagctgaccaAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGaa > 6:8248‑M2/41‑116 (MQ=255) ttggtcggcttgcaggaaatggtcaagggcgagctgaccaAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGaa < 5:8248‑M2/76‑1 (MQ=255) TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAg < 1:13699‑M1/131‑1 (MQ=255) TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAg > 2:13699‑M1/1‑131 (MQ=255) TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAgg < 3:187936‑M1/149‑1 (MQ=255) TGGTCAGCTCGCCCTAGACCATTTCCTGCAAGCAGAACAAGGCATTGAGGACACTGTCAACAGGCTCGATTAACAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGACGGCGCAGCTGCGGCCAATcagcag < 5:233139‑M1/148‑1 (MQ=255) GTCAGCTCGCCCTTGACCATTTCCTGCTAGCCTACCAAGGCATTGCGGACACTTTCACCAGGCTCGATTTCCAGCTGTTGGGCTGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAAtcagcat > 6:233139‑M1/1‑145 (MQ=255) GTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATcagcag > 4:187936‑M1/1‑146 (MQ=255) aGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTg > 6:76250/1‑149 (MQ=255) gCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGtt > 5:307730/1‑149 (MQ=255) gCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGATCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGtt > 2:241224/1‑149 (MQ=255) cccTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAgccggcgccg < 8:125486/114‑1 (MQ=255) cccTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAgccggcgccg > 7:125486/1‑114 (MQ=255) ccTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCg > 6:165448/1‑149 (MQ=255) gcccATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCg > 3:59170/3‑149 (MQ=255) gACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCg > 5:190262/1‑149 (MQ=255) ccATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCggg < 6:22202/149‑1 (MQ=255) ccATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCggg < 5:165448/149‑1 (MQ=255) tttCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGt > 5:306100/1‑148 (MQ=255) ccTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGAc < 6:190262/148‑1 (MQ=255) cTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACa < 5:76338/148‑1 (MQ=255) gCAAGCCGACCAAGGCATTGCGGAAACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGa > 3:88966/1‑149 (MQ=255) aGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATgg < 5:76250/149‑1 (MQ=255) gCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGc < 2:209086/149‑1 (MQ=255) cGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCGGTGCAGTTCGGCCGGGGTGACAGGATGGcc < 4:88966/148‑1 (MQ=255) caAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGc > 6:193330‑M2/3‑149 (MQ=255) caAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGc > 6:136576‑M2/3‑149 (MQ=255) | AGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGGCCGTGCAGTTCGGCCGGGGTGACAGGATGGCCATTGC > NC_002947/5933633‑5933927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |