New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5933742 =	32 (0.640)	3 (0.060)	3/248	NT	8.9%	coding (235/555 nt)	PP_5201	hypothetical protein
	?	NC_002947	5933781 =	31 (0.640)					coding (196/555 nt)	PP_5201	hypothetical protein

CCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGG  >  NC_002947/5933595‑5933890                                                                                                                                                    |                                                                                                                                                     gcaatggccatcctgtcaccccggccgaactgcacggcctgctgattggccgcagctgcgccggcgccggcttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTg                                                                                                                                                     >  6:136576‑M1/148‑149 (MQ=255) gcaatggccatcctgtcaccccggccgaactgcacggcctgctgattggccgcagctgcgccggcgccggcttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTg                                                                                                                                                     >  6:193330‑M1/148‑149 (MQ=255)   ttGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCt                                                                                                                                                      <  6:106252/146‑1 (MQ=255)   ttGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCt                                                                                                                                                      >  5:106252/1‑146 (MQ=255)         tcgtcgGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTc                                                                                                                                             >  6:103157/1‑149 (MQ=255)            tcgGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGcc                                                                                                                                          >  1:209086/1‑149 (MQ=255)             cgGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGt                                                                                                                                                   <  8:59896/139‑1 (MQ=255)             cgGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGt                                                                                                                                                   >  7:59896/1‑139 (MQ=255)                aCAAGTCCTTCCCGCCAGCGTTCCGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTg                                                                                                                                      <  3:22068/149‑1 (MQ=255)                aCAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCtcg                                                                                                                                      <  5:141903/149‑3 (MQ=255)                     tCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCAt                                                                                                                                 <  3:65240/149‑1 (MQ=255)                     tCCTTCCCGCCAGCGTTCAGGCCGAAACCGGACACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCCGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCAt                                                                                                                                 >  3:246015/1‑149 (MQ=255)                       cTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCAtt                                                                                                                                >  6:280490/1‑148 (MQ=255)                            cGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGc                                                                                                                          >  6:27493/1‑149 (MQ=255)                            cGCCAGCGTTCACGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGccc                                                                                                                                         >  1:204396/1‑134 (MQ=255)                            cGCCAGCGTTCACGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGccc                                                                                                                                         <  2:204396/134‑1 (MQ=255)                                    ttCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATAATAGGTAGGCAGCAGCAGGACCATCGCCATGTCGTAGCTGGTCAGCTCGCCCTTGACCATTTACTGCAAGCCGAc                                                                                                                  >  1:99777/1‑149 (MQ=255)                                       aGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa                                                                                                               <  1:59352/149‑1 (MQ=255)                                        ggCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg                                                                                                              >  8:229100/1‑149 (MQ=255)                                        ggCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg                                                                                                              >  7:135461/1‑149 (MQ=255)                                          ctgattggccgcagctgcgccggcgccggcttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAg                                                                                                              >  7:139973‑M1/107‑147 (MQ=255)                                           cGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCa                                                                                                           >  4:157201/1‑149 (MQ=255)                                              aaCCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTg                                                                                                        <  6:120212/149‑1 (MQ=255)                                                  ggTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGa                                                                                                    <  7:229100/149‑1 (MQ=255)                                                    tCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTAGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGaca                                                                                                  <  8:135461/149‑1 (MQ=255)                                                      aCGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACCCt                                                                                                >  4:94814/1‑149 (MQ=255)                                                          aGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCa                                                                                            <  5:103157/149‑1 (MQ=255)                                                                  caccacTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTc                                                                                    >  7:83796/1‑149 (MQ=255)                                                                       cTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGc                                                                                                                      >  8:112812/1‑110 (MQ=255)                                                                        ttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa                                                                                                               >  6:8248‑M1/77‑116 (MQ=255)                                                                        ttcgatgccgatgcctggttggccgatgccgcccaactgctggaaatcgagcctggtgacagtgtccgcaatgcctTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCaa                                                                                                               <  5:8248‑M1/40‑1 (MQ=255)                                                                          gCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCca                                                                            <  3:157201/149‑1 (MQ=255)                                                                               gcgcGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGt                                                                       <  8:83796/149‑1 (MQ=255)                                                                                    gTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGggc                                                                  >  1:161955/1‑149 (MQ=255)                                                                                                cTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCaa                                                      >  6:76338/1‑149 (MQ=255)                                                                                                       cagcaTCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAggca                                               >  5:22202/1‑149 (MQ=255)                                                                                                                  gTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGgcatcggcatcgca                                    >  4:279842/1‑147 (MQ=255)                                                                                                                          cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGc                                                         >  2:48083/1‑120 (MQ=255)                                                                                                                          cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGc                                                         <  1:48083/120‑1 (MQ=255)                                                                                                                          cagcagGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAGgccggcgc                            <  7:187591/149‑1 (MQ=255)                                                                                                                                     tCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCGAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCCTCGAAGCCGGCGCCGGCGCAGCTg                 >  1:229989/1‑149 (MQ=255)                                                                                                                                                  gCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGTCGGCGCCGGCGCAGCTGCGGCCAATcagca    <  5:280490/149‑1 (MQ=255)                                                                                                                                                    TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAg                    >  2:13699‑M1/1‑131 (MQ=255)                                                                                                                                                    TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAg                    <  1:13699‑M1/131‑1 (MQ=255)                                                                                                                                                    TGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAgg  <  3:187936‑M1/149‑1 (MQ=255)                                                                                                                                                    TGGTCAGCTCGCCCTAGACCATTTCCTGCAAGCAGAACAAGGCATTGAGGACACTGTCAACAGGCTCGATTAACAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGACGGCGCAGCTGCGGCCAATcagcag   <  5:233139‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCAGCATCATCGGTAGGCAGCAGCAGGACGATCGCCATGTCGTCGCTGGTCAGCTCGCCCTTGACCATTTCCTGCAAGCCGACCAAGGCATTGCGGACACTGTCACCAGGCTCGATTTCCAGCAGTTGGGCGGCATCGGCCAACCAGGCATCGGCATCGAAGCCGGCGCCGGCGCAGCTGCGGCCAATCAGCAGG  >  NC_002947/5933595‑5933890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.