New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5978800 =	67 (1.330)	3 (0.060)	3/250	NT	5.4%	coding (317/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978907 =	41 (0.840)					coding (210/993 nt)	PP_5241	LuxR family transcriptional regulator

CCTTGCTGCGCAAGGCCTTTGGCGACCGTGGCCTGATCCAGACCGTTCCGCGCCGGGGCTATCGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978911‑5978800 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGC  >  NC_002947/5978907‑5979054                                                                                                                                                                                                                                                                      CCTTGCTGCGCAAGGCCTTTGGCGACCGTGGCCTGATCCAGACCGTTCCGCGCCGGGGCTATCGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGAC                                                                                                                  >  8:188977/1‑148       TGCGCAAGGCCTTTGGCGACCGTGGCCTGATCCAGACCGTTCCGCGCCGGGGCTATCGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTG                                                                                                           >  2:99129/1‑149                                                              TCGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGC                                                      <  7:188977/147‑1                                                                                                                GCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGC  <  8:69787/149‑1                                                                                                                                                                                                                                                                      CCTTGCTGCGCAAGGCCTTTGGCGACCGTGGCCTGATCCAGACCGTTCCGCGCCGGGGCTATCGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978911‑5978800 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGC  >  NC_002947/5978907‑5979054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.