New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5978800 =	67 (1.330)	3 (0.060)	3/250	NT	5.4%	coding (317/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978907 =	41 (0.840)					coding (210/993 nt)	PP_5241	LuxR family transcriptional regulator

GAGCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGC  >  NC_002947/5978760‑5979054                                                                                                                                                    |                                                                                                                                                    gAGCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCgcagc                                                                                                                                                     <  1:73723/148‑1 (MQ=255)  aGCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCaa                                                                                                                                                   <  6:193018/149‑1 (MQ=255)     gtcgaggacaataacttgcaggttcaggtgtccttgCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAgg                                                                                                                                                 >  8:188977‑M1/37‑148 (MQ=255)       cTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCAGGGTCGCCAAAGGCCTTGCGCAGCAAGGaca                                                                                                                                              <  1:27679/149‑1 (MQ=255)        tCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGacac                                                                                                                                             >  2:259927/1‑149 (MQ=255)        tCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGacac                                                                                                                                             >  6:80011/1‑149 (MQ=255)          gACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATATCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGGCGCCAAAGGCCTTGCGCAGCAAGGACAcc                                                                                                                                            <  5:283317/148‑1 (MQ=255)          gACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCt                                                                                                                                           >  4:190695/1‑149 (MQ=255)              gTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAc                                                                                                                                       <  1:161630/149‑1 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCgcagc                                                                                                                                                     <  5:303805/134‑1 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCgcagc                                                                                                                                                     >  6:303805/1‑134 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAcc                                                                                                                                      <  2:321095/149‑1 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAcc                                                                                                                                      >  7:295396/1‑149 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAcc                                                                                                                                      <  6:130372/149‑1 (MQ=255)               tctcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCAGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAcc                                                                                                                                      >  4:133168/1‑149 (MQ=255)                   ggCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCt                                                                                                                                     <  5:162386/146‑1 (MQ=255)                    gCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCaa                                                                                                                                 <  5:80011/149‑1 (MQ=255)                                  caACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGa                                                                                                                   >  4:154011/1‑149 (MQ=255)                                    ccttgctgcgcaaggcctttggcgaccgtggcctgatccagaccgttccgcgccggggctatcgcctggccgcgcagatcagcctcgaggagcctggtgaggcattgggcagCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGac                                                                                                                  >  8:188977‑M2/113‑148 (MQ=255)                                      gACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAc                                                                                                                                       <  7:152905/125‑1 (MQ=255)                                      gACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAc                                                                                                                                       >  8:152905/1‑125 (MQ=255)                                          tgcgcaaggcctttggcgaccgtggcctgatccagaccgttccgcgccggggctatcgcctggccgcgcagatcagcctcgaggagcctggtgaggcattgggcagCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTg                                                                                                           >  2:99129‑M2/107‑149 (MQ=255)                                             ccAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCg                                                                                                        <  1:259927/149‑1 (MQ=255)                                              cAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCg                                                                                                        >  6:285518/1‑148 (MQ=255)                                               aaTGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGa                                                                                                      >  1:190863/1‑149 (MQ=255)                                               aaTGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGa                                                                                                      >  2:319039/1‑149 (MQ=255)                                                        ccAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCCGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTg                                                                                             <  3:133168/149‑1 (MQ=255)                                                         cAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTgg                                                                                            <  3:63424/149‑1 (MQ=255)                                                           ggCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCt                                                                                          <  1:243712/149‑1 (MQ=255)                                                               cctcGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGaa                                                                                       >  3:124778/1‑148 (MQ=255)                                                                 tcGAGGCTGATCTGCGCGGCCAGGCGATAGCCGCGGCGCGGATCGGTCTGGATCCGGCCACGGTCGCCAAAGGCCTTGCGCTGCAAGGAGACCTGCTCCTGCATGTTATTGTCCTCGACCACCGTGCAGGACCACACCTGCGTGaac                                                                                      >  5:130934/1‑147 (MQ=255)                                                                    aGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTc                                                                                 <  3:190695/149‑1 (MQ=255)                                                                                gcgGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGAc                                                                     <  3:154011/149‑1 (MQ=255)                                                                                   gCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCAc                                                                  >  4:122204/1‑149 (MQ=255)                                                                                               ccccGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTg                                                                                         >  7:36034/1‑114 (MQ=255)                                                                                               ccccGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTg                                                                                         <  8:36034/114‑1 (MQ=255)                                                                                                cccGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGcc                                                     <  6:162446/149‑1 (MQ=255)                                                                                                cccGGCGCGGAACGGTCTGGATCAGGCCACGGGCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAAGCTGCTATTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGcc                                                     <  6:229379/149‑1 (MQ=255)                                                                                                 tcgcctggccgcgcagatcagcctcgaggagcctggtgaggcattgggcagCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGc                                                      <  7:188977‑M2/96‑1 (MQ=255)                                                                                                 ccGGCGCGGAACGGTCTGGATCCGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGGCCTTGCCGACCACGCGGCCCTTGGccc                                                    >  6:60036/1‑149 (MQ=255)                                                                                                           aCGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGt                                          <  8:295396/149‑1 (MQ=255)                                                                                                               tCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCATCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGc                                       >  4:210920/1‑148 (MQ=255)                                                                                                                   gATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGc                                   <  6:16638/148‑1 (MQ=255)                                                                                                                   gATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCa                                  >  3:97892/1‑149 (MQ=255)                                                                                                                     tCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCCCGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACg                                >  5:272159/1‑149 (MQ=255)                                                                                                                               gTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCAc                      >  1:288194/1‑149 (MQ=255)                                                                                                                                tCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACg                     <  4:124778/149‑1 (MQ=255)                                                                                                                                    cAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGccca                 >  4:312745/1‑149 (MQ=255)                                                                                                                                         gCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTAGTGTCATCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTTATCAGCGTGGCCAGCACGTCGACAGCACGCCCACCCaa            <  5:40379/149‑1 (MQ=255)                                                                                                                                              gcgcAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGa       >  5:185885/1‑149 (MQ=255)                                                                                                                                                   gCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGc  <  8:69787‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GAGCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAGGATCGGC  >  NC_002947/5978760‑5979054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.