| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5980951 = | 69 (1.370) | 3 (0.060) | 3/252 | NT | 4.4% | coding (1596/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| ? | NC_002947 | 5980990 = | 62 (1.260) | coding (1635/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGGCACCAAGACCAGCGCATGGCCTGGGTGTCGAAGATGAACAGCTGGTCTTCGACCATGGCCCTGAGGATCTGGTTGATGAAAAACGGGTTGCCCGCCGTCTTGCCATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981099‑5980951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGC > NC_002947/5980990‑5981136 GCAGGCACCAAGACCAGCGCATGGCCTGGGTGTCGAAGATGAACAGCTGGTCTTCGACCATGGCCCTGAGGATCTGGTTGATGAAAAACGGGTTGCCCGCCGTCTTGCCATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGC > 2:42928/1‑148 CCATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTACATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCC > 6:164128/1‑149 ATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGG < 3:196159/137‑1 ATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGATGTTCATCTTCGACACCCAGGCCATGCGCTGG > 4:196159/1‑137 CATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGC < 1:239836/149‑1 GCAGGCACCAAGACCAGCGCATGGCCTGGGTGTCGAAGATGAACAGCTGGTCTTCGACCATGGCCCTGAGGATCTGGTTGATGAAAAACGGGTTGCCCGCCGTCTTGCCATGCACCCGTTCGGCCAGTTGAAATGCGGCCTCGGGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981099‑5980951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGC > NC_002947/5980990‑5981136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |