New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980951 =	69 (1.370)	3 (0.060)	3/252	NT	4.4%	coding (1596/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980990 =	62 (1.260)					coding (1635/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
Rejected: Frequency below/above cutoff threshold.

ACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGC  >  NC_002947/5980844‑5981136                                                                                                                                                   |                                                                                                                                                   ggcaccaagaccagcgcatggcctgggtgtcgaagatgtacagctggtcttcgaccatggccctgaggatctggttgatgaaaaacgggttgcccgccgtcttgccaTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATgg                                                                                                                                                  >  6:164128‑M1/108‑149 (MQ=255) accaGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATgg                                                                                                                                                  <  6:81084/149‑1 (MQ=255) accaGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATgg                                                                                                                                                  <  4:211159/149‑1 (MQ=255)    aGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCaa                                                                                                                                               <  2:51579/149‑1 (MQ=255)     gcgcACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAg                                                                                                                                              <  5:191264/149‑1 (MQ=255)       gcACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGAc                                                                                                                                            >  2:317337/1‑149 (MQ=255)           ccagcgcatggcctgggtgtcgaagatgaacatctggtcttcgaccatggccctgaggatctggttgatgaaaaacgggttgcccgccgtcttgccaTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCAt                                                                                                                                                    >  4:196159‑M1/98‑137 (MQ=255)           ccagcgcatggcctgggtgtcgaagatgaacagctggtcttcgaccatggccctgaggatctggttgatgaaaaacgggttgcccgccgtcttgccaTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCAt                                                                                                                                                    <  3:196159‑M1/40‑1 (MQ=255)            gCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGAcggcgg                                                                                                                                       <  1:209138/149‑1 (MQ=255)             cTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCggg                                                                                                                                      <  7:179826/149‑1 (MQ=255)              tGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCggg                                                                                                                                      >  7:12681/1‑148 (MQ=255)                gCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGAcgg                                                                                                                                          <  8:28264/142‑1 (MQ=255)                gCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGAcgg                                                                                                                                          >  7:28264/1‑142 (MQ=255)                       ccGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGttt                                                                                                                            >  4:5278/1‑149 (MQ=255)                          cAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtc                                                                                                                         <  8:17189/149‑1 (MQ=255)                           aGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtca                                                                                                                        >  5:159143/1‑149 (MQ=255)                           aGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtca                                                                                                                        <  1:317337/149‑1 (MQ=255)                             cGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtcatc                                                                                                                      <  3:5278/149‑1 (MQ=255)                               gTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCaa                                                                                                                    >  5:176593/1‑149 (MQ=255)                                tGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAAc                                                                                                                   <  4:264434/149‑1 (MQ=255)                                tGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAAc                                                                                                                   >  1:42928/1‑149 (MQ=255)                                    cagcaCCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAAc                                                                                                                   >  3:119287/1‑145 (MQ=255)                                    cagcaCCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGa                                                                                                               <  4:222437/149‑1 (MQ=255)                                         ccacGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCt                                                                                                           >  1:17530/1‑148 (MQ=255)                                           acGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAg                                                                                                        >  6:62517/1‑149 (MQ=255)                                                 aaCCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCa                                                                                                   <  6:125450/148‑1 (MQ=255)                                                   ccTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAg                                                                                                        <  7:14857/141‑1 (MQ=255)                                                   ccTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAg                                                                                                        >  8:14857/1‑141 (MQ=255)                                                   ccTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATAGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATgg                                                                                                <  4:169678/149‑1 (MQ=255)                                                     tGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtcatc                                                                                                                      <  1:292571/125‑1 (MQ=255)                                                     tGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTtcatc                                                                                                                      >  2:292571/1‑125 (MQ=255)                                                              tGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAg                                                                                     >  7:15518/1‑149 (MQ=255)                                                                gCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCt                                                                                   <  3:81680/149‑1 (MQ=255)                                                                  cGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGt                                                                                 >  6:154282/1‑149 (MQ=255)                                                                  cGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGt                                                                                 <  6:159143/149‑1 (MQ=255)                                                                   gTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGtt                                                                                >  2:293509/1‑149 (MQ=255)                                                                   gTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGtt                                                                                <  8:12681/149‑1 (MQ=255)                                                                    ttGGGGCGGGGGCCGAGCGGACTGGCGAGCGCCTCCCTGTTGCCCCCGCGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCCACCAGATCCTCAGGGCCATGGGCGAAGACCAGCTGTTc                                                                               <  4:62708/149‑1 (MQ=255)                                                                        ggCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCt                                                                           >  8:2062/1‑149 (MQ=255)                                                                          cGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTc                                                                         <  8:14634/149‑1 (MQ=255)                                                                            gTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGAc                                                                                        <  7:258530/132‑1 (MQ=255)                                                                            gTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGa                                                                       >  7:297749/1‑149 (MQ=255)                                                                            gTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTAGAAGAc                                                                                        >  8:258530/1‑132 (MQ=255)                                                                             tGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCTGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTg                                                                                  <  1:246043/137‑1 (MQ=255)                                                                             tGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTg                                                                                  >  2:246043/1‑137 (MQ=255)                                                                                        aTTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGcctt                                                           <  5:154282/149‑3 (MQ=255)                                                                                             cGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAg                                                                >  5:193560/1‑139 (MQ=255)                                                                                             cGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAg                                                                <  6:193560/139‑1 (MQ=255)                                                                                                gcgcTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGt                                                   <  2:17530/149‑1 (MQ=255)                                                                                                 cgcTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAg                                                                <  4:210405/135‑1 (MQ=255)                                                                                                 cgcTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAg                                                                >  3:210405/1‑135 (MQ=255)                                                                                                    ttCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTg                                               >  4:138137/1‑149 (MQ=255)                                                                                                    ttCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTg                                               >  4:142969/1‑149 (MQ=255)                                                                                                         ccatgcacccgttcggccagttgaaatgcggcctcgggggcaTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTACATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGcc                                          >  6:164128‑M2/43‑149 (MQ=255)                                                                                                           ttGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTg                                        <  7:146247/149‑1 (MQ=255)                                                                                                           atgcacccgttcggccagttgaaatgcggcctcgggggcaTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTgg                                                    <  3:196159‑M2/97‑1 (MQ=255)                                                                                                           atgcacccgttcggccagttgaaatgcggcctcgggggcaTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGATGTTCATCTTCGACACCCAGGCCATGCGCTgg                                                    >  4:196159‑M2/41‑137 (MQ=255)                                                                                                             GCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGc                                       >  2:42928‑M1/1‑148 (MQ=255)                                                                                                                cccGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGc                                   >  3:147558/1‑149 (MQ=255)                                                                                                                       ccGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGCGGcc                            >  4:182937/1‑149 (MQ=255)                                                                                                                        cGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAgg                                                               <  5:73973/113‑1 (MQ=255)                                                                                                                        cGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAgg                                                               >  6:73973/1‑113 (MQ=255)                                                                                                                           aTTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACAcc                                                                   >  5:300415/1‑106 (MQ=255)                                                                                                                           aTTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACAcc                                                                   <  6:300415/106‑1 (MQ=255)                                                                                                                            tttCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCa                       <  1:293509/149‑1 (MQ=255)                                                                                                                              tCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCAc                      <  8:297749/148‑1 (MQ=255)                                                                                                                              tCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACt                     >  2:239836/1‑149 (MQ=255)                                                                                                                                aaCTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGCGGCCCGGCACTg                    <  3:182937/148‑1 (MQ=255)                                                                                                                                 aCTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGc                   >  3:204670/1‑148 (MQ=255)                                                                                                                                        gAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGATACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGa           <  8:15518/149‑1 (MQ=255)                                                                                                                                         aaCGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGa           >  2:267698/1‑148 (MQ=255)                                                                                                                                               tGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTc    <  7:2062/149‑1 (MQ=255)                                                                                                                                                 caTGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGc  <  1:239836‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   ACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTGGCCGAGCTGATTGGCGAGCGCTTCCATGTTGCCCCCGAGGCCGCATTTCAACTGGCCGAACGGGTGCATGGCAAGACGGCGGGCAACCCGTTTTTCATCAACCAGATCCTCAGGGCCATGGTCGAAGACCAGCTGTTCATCTTCGACACCCAGGCCATGCGCTGGTCTTGGTGCCTGCAGGCCGTGGCCCGGCACTGCTACTCCGACAATGTCGC  >  NC_002947/5980844‑5981136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.