New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5996712 =	52 (1.030)	4 (0.080)	4/252	NT	7.1%	coding (320/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5996795 =	54 (1.100)					coding (237/1983 nt)	PP_5252	hypothetical protein

AAACTGCACACCGTTGACCGAGAAAAGCCCACCGCGACCGCCGTCGCCATCAAGGACGGCCGCTTCATCGCCGTGGGCAGCGACGCCGAGGCCATGGCCCACAAGGGTGCCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5996860‑5996712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCTCGGTCAACGGTGTGCAGTTTGCCGTTGAACAGAATCAGGTCGGCGGTCATGGAACCTCCTTGCGTGGATGCGTGAGC  >  NC_002947/5996795‑5996917                                                                                                                                                                                                                                                                                  AAACTGCACACCGTTGACCGAGAAAAGCCCACCGCGACCGCCGTCGCCATCAAGGACGGCCGCTTCATCGCCGTGGGCAGCGACGCCGAGGCCATGGCCCACAAGGGTGCCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGAT                                                                                                                             >  4:154848/1‑149                                                                TTCATCGCCGTGGGCAGCGACGCCGAGGCCATGGCCCACAAGGGTGCCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGATGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCACGGTCAACGGTGTGCAG                                                              >  5:133459/1‑149                                                                  CATCGCCGTGGGCAGCGACGCCGAGGCCATGGCCCACAAGGGTGCCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGATGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCTCGGTCAACGGTGTGCAGTT                                                            >  7:40265/1‑149                                                                                                              CCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGATGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCTCGGTCAACGGTGTGCAGTTTGCCGTTGAACAGAATCAGGTCGGCGGTCATGGAACCTCCTTGC                <  8:40265/149‑1                                                                                                                            ATCGACCTCAAGCAGCGCACGGTGATGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCACGGTCAACGGTGTGCAGTTTGCCGTTGAACAGAATCAGGTCGGCGGTCATGGAACCTCCTTGCGTGGATGCGTGAGC  <  6:133459/149‑1                                                                                                                                                                                                                                                                                  AAACTGCACACCGTTGACCGAGAAAAGCCCACCGCGACCGCCGTCGCCATCAAGGACGGCCGCTTCATCGCCGTGGGCAGCGACGCCGAGGCCATGGCCCACAAGGGTGCCGCCTCGCAGATCATCGACCTCAAGCAGCGCACGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5996860‑5996712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatGAAGCGGCCGTCCTTGATGGCGACGGCGGTCGCGGTGGGCTTTTCTCGGTCAACGGTGTGCAGTTTGCCGTTGAACAGAATCAGGTCGGCGGTCATGGAACCTCCTTGCGTGGATGCGTGAGC  >  NC_002947/5996795‑5996917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.