New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 822159	35 (0.690)	4 (0.080)	4/248	NT	9.6%	coding (1530/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	= 822215	42 (0.870)					coding (1586/2412 nt)	PP_0707	hypothetical protein

CCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGCCTGTTCGCCATCCGTGT  >  NC_002947/822011‑822305                                                                                                                                                      |                                                                                                                                                   cccTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCG                                                                                                                                                    >  1:24220‑M1/1‑149 (MQ=255)      gatttgCCCCGACAGCCGGGTGGCCTGGCACTGGCGGCGCCCCTGGGCCTGGGGCCTGGCCATCTGGGGCAGGCCTGCACAATACTGGCTCGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCgg                                                                                                                                                <  1:92902/144‑1 (MQ=255)      ctgTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCgg                                                                                                                                                <  5:101572/148‑1 (MQ=255)       tgTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGTGCCTCGCCATCAGGCGCAGGCCCGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCggg                                                                                                                                               >  8:81103/1‑148 (MQ=255)        gTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTa                                                                                                                                             >  8:94633/1‑149 (MQ=255)         tCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGt                                                                                                                                              <  1:94702/147‑1 (MQ=255)            ccccGACAGCCCGGTGGCCTTGCACTGTCTTCGACCCTGCGCCTCGCGCCTCGCCATCAGGCGCAGGCCACCACAATACTAGC‑CGGCATAGGCCGCACTGTCGTGCTGTTCCTCCCACTGCTACTGGTGTTGAAGCCGACgg                                                                                                                                                >  2:92902/1‑142 (MQ=255)             cgcGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCTGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGc                                                                                                                                        <  7:74651/147‑1 (MQ=255)             cccGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCA‑CATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGcc                                                                                                                                       >  6:101084/1‑149 (MQ=255)                           ggCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCt                                                                                                                          <  4:309897/149‑1 (MQ=255)                             ccTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGc                                                                                                                                  <  8:91287/139‑1 (MQ=255)                             ccTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGc                                                                                                                                  >  7:91287/1‑139 (MQ=255)                              cTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGATGCTGGTGTTGATGCCGccggtcccatcccagtcgcccagactcaa                                                                                                                       >  8:96105‑M1/1‑120 (MQ=255)                                  cACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGt                                                                                                                   <  7:94633/149‑1 (MQ=255)                                   aCTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTAc                                                                                                                                            >  7:220267/1‑123 (MQ=255)                                   aCTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTAc                                                                                                                                            <  8:220267/123‑1 (MQ=255)                                       gCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGc                                                                                                                                  <  6:143303/129‑1 (MQ=255)                                       gCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGc                                                                                                                                  >  5:143303/1‑129 (MQ=255)                                       gCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCA‑CATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGc                                                                                                             <  5:101084/149‑1 (MQ=255)                                             aCCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACtg                                                                                                        >  4:80945/1‑149 (MQ=255)                                               ccTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACtggg                                                                                                      <  3:80945/149‑1 (MQ=255)                                                 tGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACtgggat                                                                                                    >  2:245616/1‑149 (MQ=255)                                                     ccTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGt                                                                                                                                                   <  1:260350/98‑1 (MQ=255)                                                     ccTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGt                                                                                                                                                   >  2:260350/1‑98 (MQ=255)                                                       tGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGAcc                                                                                              >  7:58579/1‑149 (MQ=255)                                                         gcgcCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGccggtcccatcccagtcgcccagactcaacagcaattcgctagggctggtacccga                                                                                            <  7:96105‑M1/149‑57 (MQ=255)                                                            ccTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGcgg                                                                                         >  2:24220‑M2/1‑146 (MQ=255)                                                                 ccATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAgg                                                                                    <  1:245616/149‑1 (MQ=255)                                                                    tCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGccggtcccatcccagtcgcccagactcaacagcaattcgctagggctggtacccgacg                                                                                          <  3:69642‑M1/140‑59 (MQ=255)                                                                    tCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGccggtcccatcccagtcgcccagactcaacagcaattcgctagggctggtaaccgacg                                                                                          >  4:69642‑M1/1‑82 (MQ=255)                                                                          gcAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACt                                                                                                         <  2:229093/119‑1 (MQ=255)                                                                          gcAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGc                                                                            >  3:56204/1‑148 (MQ=255)                                                                          gcAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCGCTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACt                                                                                                         >  1:229093/1‑119 (MQ=255)                                                                            aGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAAc                                                                         >  3:266057/1‑149 (MQ=255)                                                                            aGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAAc                                                                         <  4:56204/149‑1 (MQ=255)                                                                                        tACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTg                                                             <  7:66663/149‑1 (MQ=255)                                                                                                cGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAg                                                       >  5:59357/1‑148 (MQ=255)                                                                                                         ccGCACTGTCGTGCTGTTCCTTGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGAAGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCctgc                                             >  3:35348/1‑149 (MQ=255)                                                                                                           gCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCctgctg                                           <  4:266057/149‑1 (MQ=255)                                                                                                                 tCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTg                                     >  8:175765/1‑149 (MQ=255)                                                                                                                               gCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCgg                       >  7:100710/1‑149 (MQ=255)                                                                                                                                cACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGt                      <  8:83248/149‑1 (MQ=255)                                                                                                                                    gctgctgGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGcc                  >  1:795/1‑149 (MQ=255)                                                                                                                                      tgctgGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGCCTg                >  3:24133/1‑149 (MQ=255)                                                                                                                                         tgGTGTTGTTGCCGTCGGGTACCAGGGCTTGCGAATTGCTGTTGAGTCTGGGGGACTGGGATGGGACCGGCGGGAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTTGCCTTGGCGATCTTCCTCGGTGGCCTGTTc             <  4:35348/149‑1 (MQ=255)                                                                                                                                         tgGTGTTGTTGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGCCTGTTc             <  8:100710/149‑1 (MQ=255)                                                                                                                                              ttGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGCCTGTTCGCCAt        <  8:58579/149‑1 (MQ=255)                                                                                                                                                    ccgccggtcccatcccagtcgcccagactcaacagcaattcgctagggctggtacccgacggcatcaacaccagcagcagtgccaggaacagcacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctgatggcgagg  >  2:24220‑M1/1‑3 (MQ=255)                                                                                                                                                     cGTCGGTTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGcggcatcaacaccagcagcagtgccaggaacagcacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctga          >  4:69642‑M2/1‑58 (MQ=255)                                                                                                                                                     cGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGcggcatcaacaccagcagcagtgccaggaacagcacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctga          <  3:69642‑M2/140‑83 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGC‑CGGCATCGGCCGCACTGTCGTGCTGTTCCTGGCACTGCTGCTGGTGTTGATGCCGTCGGGTACCAGCCCTAGCGAATTGCTGTTGAGTCTGGGCGACTGGGATGGGACCGGCGGCAAGGTGCTCGGCAACCTGAACATCGTGCCGCAGGACATCCTGCTGGCCTTGGCGATCTTCCTCGGTGGCCTGTTCGCCATCCGTGT  >  NC_002947/822011‑822305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.