New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	877664 =	48 (0.950)	5 (0.100)	3/246	NT	10.1%	coding (515/966 nt)	hprA	glycerate dehydrogenase
	?	NC_002947	877716 =	43 (0.900)					coding (463/966 nt)	hprA	glycerate dehydrogenase

CACCGAGCATATGCCGGGTGTGCTCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTA  >  NC_002947/877518‑877806                                                                                                                                                   |                                                                                                                                                tgtatcccagcataccctgtcccttctgtttgccctgtccactaggctgtgcgactacaaccaggcggtggccgatggccagtgggccaaggccagccagttcttcctgcttgactttcctatagtcgagctggagggcaaaacccTc                                                                                                                                                >  4:90019‑M1/147‑148 (MQ=255)     gAGCATATGCCGGGTGTGCTCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGTCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGc                                                                                                                                             >  6:116915/1‑147 (MQ=255)       gCATATGCAGGGTGTGCTCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGc                                                                                                                                         >  5:227048/1‑149 (MQ=255)         atatGCCGGGTGTGCTCGTTAAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCt                                                                                                                                       >  5:98009/1‑149 (MQ=255)              ccGGGTGTGCTCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGTCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGcc                                                                                                                                   <  5:116915/148‑1 (MQ=255)                        tCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCgccgcc                                                                                                                        <  6:227048/149‑1 (MQ=255)                        tCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCgccgcc                                                                                                                        >  6:287646/1‑149 (MQ=255)                        tCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCgccgcc                                                                                                                        >  6:151367/1‑149 (MQ=255)                           ttCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAg                                                                                                                     >  8:143947/1‑149 (MQ=255)                                 gggCAGTGCAGGGTCAGTGCATCAACTTGCGGCACCAACTCGTCCAGAGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGCCTTCGGCCAGCCTCGCCACAGCGCCGCCCAGTTCGcc                                                                                                               >  4:195197/1‑149 (MQ=255)                                    cAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTg                                                                                                            <  7:98272/149‑1 (MQ=255)                                         cAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGcc                                                                                                         >  5:268205/1‑147 (MQ=255)                                              gctgtgcgactacaaccaggcggtggccgatggccagtgggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAgg                                                                                                  >  7:209411‑M1/102‑149 (MQ=255)                                               cAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGc                                                                                                 <  7:143947/149‑1 (MQ=255)                                                  tgcgactacaaccaggcggtggccgatggccagtgggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTc                                                                                                                                                >  3:13106‑M1/98‑99 (MQ=255)                                                  tgcgactacaaccaggcggtggccgatggccagtgggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTc                                                                                                                                                <  4:13106‑M1/2‑1 (MQ=255)                                                  tGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTc                                                                                                                                      <  8:116185/109‑1 (MQ=255)                                                  ctccacgacaacccggcgggggccgatggccagtgggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGa                                                                                              >  8:277211‑M1/98‑149 (MQ=255)                                                   gCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAg                                                                                             >  2:271282/1‑149 (MQ=255)                                                    cATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAg                                                                                             <  1:271282/148‑1 (MQ=255)                                                     gcctacccccaggcggtggccgagggccagggggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGa                                                                                              >  8:272956‑M1/95‑146 (MQ=255)                                                     gactacaaccaggcggtggccgatggccagtgggcccaggccagccagttctgccggctggcctttcctatcgtcgagctggagggcaaaacccTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGa                                                                                              <  7:272956‑M1/52‑1 (MQ=255)                                                     gactacaaccaggcggtggccgatggccagtgggccaaggccagccagttctgcctgctggactttcctatcgtcgagctggagggcaaaacccTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGa                                                                                              <  7:277211‑M1/52‑1 (MQ=255)                                                     aTCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAggg                                                                                           >  5:247308/1‑149 (MQ=255)                                                      tCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGt                                                                                          >  6:96378/1‑149 (MQ=255)                                                         aCTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGtttt                                                                                       <  5:96378/149‑1 (MQ=255)                                                           ttGCGGCAGCAACTAGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGc                                                                                     >  8:105988/1‑149 (MQ=255)                                                               ggCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTc                                                                                 >  6:91000/1‑149 (MQ=255)                                                                gcagcaACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTc                                                                                 >  2:300709/1‑148 (MQ=255)                                                                   gcaACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGa                                                                                                       >  5:258999/1‑123 (MQ=255)                                                                   gcaACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGa                                                                                                       <  6:258999/123‑1 (MQ=255)                                                                      aCTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGCGCAGGCCGAGGGTTTTGCCCTCCAGCTcg                                                                          >  4:128818/1‑149 (MQ=255)                                                                       cTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                         <  6:268205/149‑1 (MQ=255)                                                                           tCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGAt                                                                     <  5:91000/149‑1 (MQ=255)                                                                              aGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAg                                                                   >  8:303197/1‑148 (MQ=255)                                                                                   cAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCAGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGt                                                             >  6:199999/1‑149 (MQ=255)                                                                                    aGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTc                                                            >  5:168691/1‑149 (MQ=255)                                                                                      ccGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCca                                                          >  5:206775/1‑149 (MQ=255)                                                                                        gATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCcag                                                         >  3:152994/1‑148 (MQ=255)                                                                                         aTCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                         >  5:200076/1‑131 (MQ=255)                                                                                         aTCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                         <  6:200076/131‑1 (MQ=255)                                                                                                     cGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctggc                                          >  3:10154/1‑149 (MQ=255)                                                                                                     cGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCGCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctgg                                           <  6:98009/148‑1 (MQ=255)                                                                                                      gggCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctggct                                         <  7:303197/149‑1 (MQ=255)                                                                                                           caccaggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAgcaggcag                                                  <  1:272137/131‑1 (MQ=255)                                                                                                             cTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTg                                  >  7:55305/1‑149 (MQ=255)                                                                                                             cTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCACGACCATAGGAAAGTCCAccaggcag                                                  >  2:272137/1‑134 (MQ=255)                                                                                                                ggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTgg                                 <  5:287646/147‑1 (MQ=255)                                                                                                                ggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGcc                               >  4:45267/1‑149 (MQ=255)                                                                                                                 gATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGccc                              <  6:168691/149‑1 (MQ=255)                                                                                                                      gCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTgg                         >  2:62194/1‑149 (MQ=255)                                                                                                                          gCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCAt                     >  6:146516/1‑149 (MQ=255)                                                                                                                              aGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCg                   <  4:152994/147‑1 (MQ=255)                                                                                                                                           cGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg    >  5:35624/1‑149 (MQ=255)                                                                                                                                           cGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg    <  6:35624/149‑1 (MQ=255)                                                                                                                                            gAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAACCTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg    <  1:62194/149‑1 (MQ=255)                                                                                                                                             aaGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTa  <  7:105988/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                CACCGAGCATATGCCGGGTGTGCTCGTTCAGCGGGCAGTGCAGGGTCAGTGCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTA  >  NC_002947/877518‑877806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.