New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	877664 =	48 (0.950)	5 (0.100)	3/246	NT	10.1%	coding (515/966 nt)	hprA	glycerate dehydrogenase
	?	NC_002947	877716 =	43 (0.900)					coding (463/966 nt)	hprA	glycerate dehydrogenase

GCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAACAGCAGGGCCAGGGTATGCTGGGCTACA  >  NC_002947/877568‑877861                                                                                                                                                     |                                                                                                                                                   gCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAg                                                                                                                                                    >  2:271282/1‑149 (MQ=255)  cATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAg                                                                                                                                                    <  1:271282/148‑1 (MQ=255)   aTCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAggg                                                                                                                                                  >  5:247308/1‑149 (MQ=255)    tCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGt                                                                                                                                                 >  6:96378/1‑149 (MQ=255)       aCTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGtttt                                                                                                                                              <  5:96378/149‑1 (MQ=255)         ttGCGGCAGCAACTAGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGc                                                                                                                                            >  8:105988/1‑149 (MQ=255)             ggCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTc                                                                                                                                        >  6:91000/1‑149 (MQ=255)              gcagcaACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTc                                                                                                                                        >  2:300709/1‑148 (MQ=255)                    aCTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGCGCAGGCCGAGGGTTTTGCCCTCCAGCTcg                                                                                                                                 >  4:128818/1‑149 (MQ=255)                     cTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                                                                                <  6:268205/149‑1 (MQ=255)                         tCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGAt                                                                                                                            <  5:91000/149‑1 (MQ=255)                            aGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAg                                                                                                                          >  8:303197/1‑148 (MQ=255)                                 cAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCAGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGt                                                                                                                    >  6:199999/1‑149 (MQ=255)                                  aGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTc                                                                                                                   >  5:168691/1‑149 (MQ=255)                                    ccGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCca                                                                                                                 >  5:206775/1‑149 (MQ=255)                                      gATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCcag                                                                                                                >  3:152994/1‑148 (MQ=255)                                       aTCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                                                                                <  6:200076/131‑1 (MQ=255)                                       aTCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTcga                                                                                                                                >  5:200076/1‑131 (MQ=255)                                                   cGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctggc                                                                                                 >  3:10154/1‑149 (MQ=255)                                                   cGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCGCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctgg                                                                                                  <  6:98009/148‑1 (MQ=255)                                                    gggCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑ctggct                                                                                                <  7:303197/149‑1 (MQ=255)                                                         caccaggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAgcaggcag                                                                                                         <  1:272137/131‑1 (MQ=255)                                                           cTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTg                                                                                         >  7:55305/1‑149 (MQ=255)                                                           cTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCACGACCATAGGAAAGTCCAccaggcag                                                                                                         >  2:272137/1‑134 (MQ=255)                                                              ggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTgg                                                                                        <  5:287646/147‑1 (MQ=255)                                                              ggATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGcc                                                                                      >  4:45267/1‑149 (MQ=255)                                                               gATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGccc                                                                                     <  6:168691/149‑1 (MQ=255)                                                                    gCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTgg                                                                                >  2:62194/1‑149 (MQ=255)                                                                        gCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCAt                                                                            >  6:146516/1‑149 (MQ=255)                                                                            aGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCg                                                                          <  4:152994/147‑1 (MQ=255)                                                                                         cGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg                                                           <  6:35624/149‑1 (MQ=255)                                                                                         cGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg                                                           >  5:35624/1‑149 (MQ=255)                                                                                          gAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAACCTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTg                                                           <  1:62194/149‑1 (MQ=255)                                                                                           aaGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTa                                                         <  7:105988/149‑1 (MQ=255)                                                                                                 tcggcctgctcggccacggcgaactgggcggcgcagtggcgaggctggccgaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCCCTGGCCCTCGGCCACCGCCTGGGGGtaggc                                                      >  8:272956‑M2/53‑144 (MQ=255)                                                                                                 tcggcctgctcggccacggcgaactgggcggcgcagtggcgaggctggccgaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCCCCGCCGGGTTgtcgtggag                                                   >  8:277211‑M2/53‑145 (MQ=255)                                                                                                 tcggcctgctcggccacggcgaactgggcggcgcagtggcgaggctggccgaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTc                                                      <  7:277211‑M2/94‑1 (MQ=255)                                                                                                 tcggcctgctcggccacggcgaactgggcggcgcagtggcgaggctggccgaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGGCCAGCCGGCAGAA‑CTGGCTGGCCTGGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTc                                                      <  7:272956‑M2/94‑1 (MQ=255)                                                                                                     cctgctcggccacggcgaactgggcggcgcagtggcgaggctggccgaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGc                                               >  7:209411‑M2/49‑149 (MQ=255)                                                                                                         ccTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCCTCGGCCACCGCCTGGGTGTAGTCGCACTGCCgcg                                           >  4:206083/1‑147 (MQ=255)                                                                                                           tCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTg                                         >  7:305405/1‑149 (MQ=255)                                                                                                               cACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGa                                            >  6:207324/1‑142 (MQ=255)                                                                                                               cACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGa                                            <  5:207324/142‑1 (MQ=255)                                                                                                                 cTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAgg                                   >  2:68/1‑149 (MQ=255)                                                                                                                 cTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAgg                                   <  3:195197/149‑1 (MQ=255)                                                                                                                      ccgccCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCaa                              <  6:206775/149‑1 (MQ=255)                                                                                                                       cgccCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTg                                                                                         >  3:164254/1‑89 (MQ=255)                                                                                                                       cgccCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTg                                                                                         <  4:164254/89‑1 (MQ=255)                                                                                                                         cccAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAAcag                           >  4:274796/1‑149 (MQ=255)                                                                                                                          ccAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAAcag                           >  4:45258/1‑148 (MQ=255)                                                                                                                             gTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAACAGCAgg                       <  5:146516/149‑1 (MQ=255)                                                                                                                                   cGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAACAGCAGGGCCAgg                 <  3:45258/149‑1 (MQ=255)                                                                                                                                                   gaGGGTTTTGCCCTCCAGCTCGACTATAGGAAAGTCAAGCAGGAAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCTAGTGGACAGGGCAAACAGAAGGGACAGGGTATGCTGGGATACa  >  4:90019‑M2/3‑148 (MQ=255)                                                                                                                                                   gaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGca                                                   >  3:13106‑M2/3‑99 (MQ=255)                                                                                                                                                   gaGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGca                                                   <  4:13106‑M2/97‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCATCAACTTGCGGCAGCAACTCGTCCAGCGGCAGCCGATCGGCGCGCTCCGGGCGGCCTGGGATCTGCCCGCTCAGTACACGCATACCGAAGGCTTCGGCCAGCCTCGCCACTGCGCCGCCCAGTTCGCCGTGGCCGAGCAGGCCGAGGGTTTTGCCCTCCAGCTCGACGATAGGAAAGTCCAGCAGGCAGAA‑CTGGCTGGCCTTGGCCCACTGGCCATCGGCCACCGCCTGGTTGTAGTCGCACAGCCGAGTGGCCAGGGCCAACAGCAGGGCCAGGGTATGCTGGGCTACA  >  NC_002947/877568‑877861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.