New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	923508 =	39 (0.770)	3 (0.060)	3/246	NT	7.3%	coding (1685/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	923559 =	39 (0.810)					coding (1634/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

GACGAAGTCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATC  >  NC_002947/923360‑923653                                                                                                                                                     |                                                                                                                                                  gACGAAGTCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTcag                                                                                                                                                   <  4:168987/149‑1 (MQ=255) gACGAAGTCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTcag                                                                                                                                                   <  2:68800/149‑1 (MQ=255)   cGAAGTCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTcag                                                                                                                                                   >  3:267882/1‑147 (MQ=255)        tCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTc                                                                                                                                            <  7:300362/149‑1 (MQ=255)        tCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGGTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTc                                                                                                                                            <  4:228312/149‑1 (MQ=255)          cAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTc                                                                                                                                            >  4:95464/1‑147 (MQ=255)                 ccAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGc                                                                                                                                   <  1:148778/149‑1 (MQ=255)                 ccAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGc                                                                                                                                   <  8:153510/149‑1 (MQ=255)                 ccAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGACGAAGTCACGGCGCAGGTCAGCCGGGTCGCGGTGGGc                                                                                                                                   >  4:230501/1‑149 (MQ=255)                      ggcgggCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCGGGCCGGCAGCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTGAGCAGGGTCGAGGTGGGCCATg                                                                                                                               <  3:261733/148‑1 (MQ=255)                                 cgGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTcc                                                                                                                   <  3:95464/149‑1 (MQ=255)                                    ccaccaGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAgg                                                                                                                <  6:274867/149‑1 (MQ=255)                                        caGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCTCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGa                                                                                                            >  6:15110/1‑149 (MQ=255)                                         aGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGGCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGAt                                                                                                           <  7:171214/149‑1 (MQ=255)                                           ttCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGAtct                                                                                                         >  1:190575/1‑149 (MQ=255)                                                ggTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGccc                                                                                                    >  1:38124/1‑149 (MQ=255)                                                 gTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCCCGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTAGCCCt                                                                                                   >  6:228129/1‑149 (MQ=255)                                                  tCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCTCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTg                                                                                                  <  5:15110/149‑1 (MQ=255)                                                      gatatccagccgggcgagcgcattgccgtgctgggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCa                                                                                                >  7:268647‑M1/96‑147 (MQ=255)                                                         cctggccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAc                                                                                               >  6:92752/1‑145 (MQ=255)                                                           tggccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGccc                                                                                                    <  7:71797/138‑1 (MQ=255)                                                           tggccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGccc                                                                                                    >  8:71797/1‑138 (MQ=255)                                                              ccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCAt                                                                                      <  2:23377/149‑1 (MQ=255)                                                                     cGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCccca                                                                               <  8:143598/149‑1 (MQ=255)                                                                       aGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCCCCAGATCCCTGGCcccccc                                                                             >  6:226511/1‑149 (MQ=255)                                                                         ggTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCcccacc                                                                             >  1:155870/1‑147 (MQ=255)                                                                           tGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAgc                                                                         <  5:63476/149‑1 (MQ=255)                                                                             aGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAgcg                                                                        <  2:38124/148‑1 (MQ=255)                                                                                       ggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAg                                                                                            >  4:83946‑M1/63‑118 (MQ=255)                                                                                       ggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAg                                                                                            <  3:83946‑M1/56‑1 (MQ=255)                                                                                                       cAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGgcgc                                             >  6:188127/1‑149 (MQ=255)                                                                                                          ccTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCcccaccc                                                                            >  4:34580/1‑115 (MQ=255)                                                                                                          ccTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCcccaccc                                                                            <  3:34580/115‑1 (MQ=255)                                                                                                                 tACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTGAGCAGGGTCGTTGTGGGCCATGGCGATGCCGTCCATGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACTCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCggac                                   <  5:228129/149‑3 (MQ=255)                                                                                                                   cTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGccc                                  <  2:283153/148‑1 (MQ=255)                                                                                                                     gCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGc                               >  2:117583/1‑149 (MQ=255)                                                                                                                      cGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAg                                <  2:155870/147‑1 (MQ=255)                                                                                                                      cGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCa                              >  7:290766/1‑149 (MQ=255)                                                                                                                        gcagcaGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACg                            >  8:303759/1‑149 (MQ=255)                                                                                                                        gcagcaGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCAGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACg                            >  5:280894/1‑149 (MQ=255)                                                                                                                         cagcagGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACgg                           <  5:92752/149‑1 (MQ=255)                                                                                                                                   aCGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTc                 <  4:267882/149‑1 (MQ=255)                                                                                                                                       cACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGccc             >  1:218482/1‑149 (MQ=255)                                                                                                                                             gctggTCAGCAGGGTAGAGGTGGGCGATGGCGATGCCGTCCAGGCTGATCTCGACCTGCACCAGATCCTTGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGTCGCGGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg       <  1:93819/146‑1 (MQ=255)                                                                                                                                             gcAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg       <  2:190575/149‑1 (MQ=255)                                                                                                                                             gcAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCACCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACCGCAATGCTCTCGCCCGGCTg        >  2:93819/1‑148 (MQ=255)                                                                                                                                                 gTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCa                         >  6:26063/1‑127 (MQ=255)                                                                                                                                                 gTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCa                         <  5:26063/127‑1 (MQ=255)                                                                                                                                                     GCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATc  >  7:29032‑M1/1‑146 (MQ=255)                                                                                                                                                     GCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATc  <  8:29032‑M1/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GACGAAGTCCAGTGCGCCAGTGGCGGCCAGCGCGGCCACCAGTTCCTGGTCGCTGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATC  >  NC_002947/923360‑923653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.