New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	923508 =	39 (0.770)	3 (0.060)	3/246	NT	7.3%	coding (1685/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	923559 =	39 (0.810)					coding (1634/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

TGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGG  >  NC_002947/923413‑923699                                                                                                                                                   |                                                                                                                                              gatatccagccgggcgagcgcattgccgtgctgggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCa                                                                                                                                               >  7:268647‑M1/96‑147 (MQ=255)    cctggccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAc                                                                                                                                              >  6:92752/1‑145 (MQ=255)         ccGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCAt                                                                                                                                    <  2:23377/149‑1 (MQ=255)                cGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCccca                                                                                                                             <  8:143598/149‑1 (MQ=255)                  aGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCCC‑CAGATCCCTGGCcccccc                                                                                                                           >  6:226511/1‑149 (MQ=255)                    ggTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCcccacc                                                                                                                           >  1:155870/1‑147 (MQ=255)                      tGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAgc                                                                                                                       <  5:63476/149‑1 (MQ=255)                        aGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAgcg                                                                                                                      <  2:38124/148‑1 (MQ=255)                                  ggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAg                                                                                                                                          >  4:83946‑M1/63‑118 (MQ=255)                                  ggccgcaacggcgccggcaaatcaaccttgctgcaggcgctgggtggggccatggatctggtGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAg                                                                                                                                          <  3:83946‑M1/56‑1 (MQ=255)                                                  cAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGgcgc                                                                                           >  6:188127/1‑149 (MQ=255)                                                     ccTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCcccaccc                                                                                                                          >  4:34580/1‑115 (MQ=255)                                                     ccTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCcccaccc                                                                                                                          <  3:34580/115‑1 (MQ=255)                                                            tACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTGAGCAGGGTCGTTGTGGGCCATGGCGATGCCGTCCATGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACTCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCggac                                                                                 <  5:228129/149‑3 (MQ=255)                                                              cTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGccc                                                                                <  2:283153/148‑1 (MQ=255)                                                                gCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGc                                                                             >  2:117583/1‑149 (MQ=255)                                                                 cGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAg                                                                              <  2:155870/147‑1 (MQ=255)                                                                 cGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCa                                                                            >  7:290766/1‑149 (MQ=255)                                                                   gcagcaGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACg                                                                          >  8:303759/1‑149 (MQ=255)                                                                   gcagcaGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCAGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACg                                                                          >  5:280894/1‑149 (MQ=255)                                                                    cagcagGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACgg                                                                         <  5:92752/149‑1 (MQ=255)                                                                              aCGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTc                                                               <  4:267882/149‑1 (MQ=255)                                                                                  cACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGccc                                                           >  1:218482/1‑149 (MQ=255)                                                                                        gctggTCAGCAGGGTAGAGGTGGGCGATGGCGATGCCGTCCAGGCTGATCTCGACCTGCAC‑CAGATCCTTGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGTCGCGGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg                                                     <  1:93819/146‑1 (MQ=255)                                                                                        gcAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg                                                     <  2:190575/149‑1 (MQ=255)                                                                                        gcAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCACCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACCGCAATGCTCTCGCCCGGCTg                                                      >  2:93819/1‑148 (MQ=255)                                                                                           ctggtgcagggcgagatcagcctggacggcatcgccatggcccacctcgaccctgcAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGcc                                                                                 <  3:83946‑M2/62‑1 (MQ=255)                                                                                           ctggtgcagggcgagatcagcctggacggcatcgccatggcccacctcgaccctgcAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGcc                                                                                 >  4:83946‑M2/57‑118 (MQ=255)                                                                                            gTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCa                                                                       >  6:26063/1‑127 (MQ=255)                                                                                            gTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCa                                                                       <  5:26063/127‑1 (MQ=255)                                                                                               tgcagggcgagatcagcctggacggcatcgccatggcccacctcgaccctgcAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATc                                                >  7:268647‑M2/53‑147 (MQ=255)                                                                                                GCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATc                                                <  8:29032‑M1/146‑1 (MQ=255)                                                                                                GCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATc                                                >  7:29032‑M1/1‑146 (MQ=255)                                                                                                    GGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCgg                                         >  5:188127‑M1/1‑149 (MQ=255)                                                                                                     GTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGc                                        <  3:228241‑M1/149‑1 (MQ=255)                                                                                                          ggTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCTGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAAt                                    <  5:42039/148‑1 (MQ=255)                                                                                                          ggTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATg                                   <  7:303759/149‑1 (MQ=255)                                                                                                          ggTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTAGCCCCGCAGGATATCCCGACGGCCaaa                                    >  6:42039/1‑147 (MQ=255)                                                                                                              ggCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTc                                <  4:228241/148‑1 (MQ=255)                                                                                                                ccATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg                                                     <  2:66981/125‑1 (MQ=255)                                                                                                                ccATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTgg                                                     >  1:66981/1‑125 (MQ=255)                                                                                                                ccATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGatat                                                 >  5:230666/1‑129 (MQ=255)                                                                                                                ccATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGatat                                                 <  6:230666/129‑1 (MQ=255)                                                                                                                 cATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTAGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCa                            <  5:226511/149‑1 (MQ=255)                                                                                                                     gCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTgg                        >  3:297992/1‑149 (MQ=255)                                                                                                                           ccGTCCAGGCTGATCTCGCCCTGCACGCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCggg                    >  1:3371/1‑148 (MQ=255)                                                                                                                           ccGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTAAGCACTGGCGGGTa                  >  2:131734/1‑149 (MQ=255)                                                                                                                                 aGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTc            <  2:218482/149‑1 (MQ=255)                                                                                                                                   gCTGATCTCGCCGTGCAC‑CAGATCCATGGCCCCACCCTGCGCCTGCAGCAAGGTTTATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGTATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGc          <  6:280894/149‑1 (MQ=255)                                                                                                                                   gCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGc          >  7:209227/1‑149 (MQ=255)                                                                                                                                           cGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCg           <  3:107889/140‑1 (MQ=255)                                                                                                                                           cGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCAGGATATCCAGCCGGCCAATGTTAAGCACTGGCGGGTAGTCTTAGcagatagg   >  4:107889/1‑141 (MQ=255)                                                                                                                                            gCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCggg                    <  4:85457/130‑1 (MQ=255)                                                                                                                                            gCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCggg                    >  3:85457/1‑130 (MQ=255)                                                                                                                                            gCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGAGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCgg  >  6:84792/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                              TGGCCTGGCCGGCACCGAGGGTGAGGTTTTCCCGCAGGGTGCCGTGGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCAC‑CAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGG  >  NC_002947/923413‑923699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.