New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1724428	33 (0.660)	4 (0.080)	4/244	NT	9.3%	coding (3061/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	= 1724498	47 (0.990)					coding (671/687 nt)	PP_1518	hypothetical protein

GCGGCGGTGCTGGCCATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGATCATCTCGAACA  >  NC_002947/1724281‑1724576                                                                                                                                                    |                                                                                                                                                     gcggcgGTGCTGGCCATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAggg                                                                                                                                                     >  6:294333/1‑149 (MQ=255)  cggcggTGCTGGCCATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGc                                                                                                                                                    <  3:54820/149‑1 (MQ=255)             gCCATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCg                                                                                                                                           >  6:297497/1‑147 (MQ=255)               cATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAgg                                                                                                                                       <  5:294333/149‑1 (MQ=255)                 tGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAgggg                                                                                                                                     <  3:61053/149‑1 (MQ=255)                         ttGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGaa                                                                                                                                                >  3:242463/1‑130 (MQ=255)                         ttGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGaa                                                                                                                                                <  4:242463/130‑1 (MQ=255)                              gcgTAGTGTGTTCTTCTGGCGGATGTCGGTGGCGATCATGGGCGTGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTTCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAATTGATGAAGGCCGCAGGGGGAGGGCTTAGcc                                                                                                                         <  6:161763/148‑1 (MQ=255)                                 tAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGccctc                                                                                                                      >  1:108528/1‑148 (MQ=255)                                        ttCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGtcttcggcgcgctgtaggagcgggtttacccgcgaagg                                                                                                                >  6:96968‑M1/1‑109 (MQ=255)                                                gCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAAcc                                                                                                      >  1:202959/1‑149 (MQ=255)                                                                  cATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGcc                                                                                     <  2:108528/148‑1 (MQ=255)                                                                      ggcgggcTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGtcttcggcgcgctgtaggagcgggtttacccgcgaagggagggctaagccctccccctgcggccttcag                                                                                 <  5:96968‑M1/148‑70 (MQ=255)                                                                               aTCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTg                                                                        <  8:284724/148‑1 (MQ=255)                                                                                tCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGc                                                                      >  4:109142/1‑149 (MQ=255)                                                                                   tGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAg                                                                   >  4:131178/1‑149 (MQ=255)                                                                                     gCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAgg                                                                  <  5:297497/148‑1 (MQ=255)                                                                                         cGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGt                                                             <  2:202959/149‑1 (MQ=255)                                                                                               ttACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAgccgc                                                       >  5:168298/1‑149 (MQ=255)                                                                                                   acTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGtcttcggcgcgctgtaggagcgggtttacccgcgaagggagggctaagccctccccctgcggccttcagcccttcttcac                                                                      <  7:136256‑M1/130‑81 (MQ=255)                                                                                                   acTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGtcttcggcgcgctgtaggagcgggtttacccgcgaagggagggctaagccctccccctgcggccttcagcccttcttcac                                                                      >  8:136256‑M1/1‑50 (MQ=255)                                                                                                   acTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGcc                                                                     >  4:278684/1‑131 (MQ=255)                                                                                                   acTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGcc                                                                     <  3:278684/131‑1 (MQ=255)                                                                                                          ttCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGt                                            >  7:161238/1‑149 (MQ=255)                                                                                                              tGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTg                                        >  6:148350/1‑149 (MQ=255)                                                                                                                ccGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGc                                      <  8:161238/149‑1 (MQ=255)                                                                                                                  ggCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCg                                     >  7:32725/1‑148 (MQ=255)                                                                                                                        gTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGtt                               >  4:217826/1‑148 (MQ=255)                                                                                                                        gTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGtt                               <  3:217826/148‑1 (MQ=255)                                                                                                                         tATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGAccttct                                                                          <  5:108660‑M2/104‑7 (MQ=255)                                                                                                                         tATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGAccttct                                                                          >  6:108660‑M2/1‑98 (MQ=255)                                                                                                                         tATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCACTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGACTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCt                             >  5:127352/1‑149 (MQ=255)                                                                                                                                    gTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGttt                   >  1:58763/1‑148 (MQ=255)                                                                                                                                    gTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGttt                   <  2:58763/148‑1 (MQ=255)                                                                                                                                        aGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGa              <  3:131178/149‑1 (MQ=255)                                                                                                                                          ggTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGat             >  8:56526/1‑148 (MQ=255)                                                                                                                                           gTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGAccttcttcaccctgaaccacgccgcatacaacgccggcaggaacagcagt                              <  7:136256‑M2/130‑51 (MQ=255)                                                                                                                                           gTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGAccttcttcaccctgaaccacgccgcatacaacgccggcaggaacagcagt                              >  8:136256‑M2/1‑80 (MQ=255)                                                                                                                                           gTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGaa                                   >  3:207161/1‑125 (MQ=255)                                                                                                                                           gTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGaa                                   <  4:207161/125‑1 (MQ=255)                                                                                                                                             gaagaaGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCAGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGatcatc         >  4:166799/1‑149 (MQ=255)                                                                                                                                              aagaagGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGATCAtct        <  8:32725/149‑1 (MQ=255)                                                                                                                                               agaagGtcttcggcgcgctgtaggagcgggtttacccgcgaagggagggctaagccctccccctgcggccttcagcccttcttcaccctgaaccacgccgcata                                                    >  6:108660‑M1/1‑6 (MQ=255)                                                                                                                                               agaagGtcttcggcgcgctgtaggagcgggtttacccgcgaagggagggctaagccctccccctgcggccttcagcccttcttcaccctgaaccacgccgcata                                                    <  5:108660‑M1/104‑99 (MQ=255)                                                                                                                                               agaagGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGGCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGATCAtctc       >  7:37639/1‑149 (MQ=255)                                                                                                                                                    ggCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGGCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGATCATCTCGAACa  <  8:37639/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCGGCGGTGCTGGCCATGATCCCGTTGTCGCGTAGTGTGTTCTACGGGCCGATGGCGGTGGCGATCATGGGCGGGCTGATCGTGGCCACGGTGCTTACACTGCTGTTCCTGCCGGCGTTGTATGCGGCGTGGTTCAGGGTGAAGAAGGGCTGAAGGCCGCAGGGGGAGGGCTTAGCCCTCCCTTCGCGGGTAAACCCGCTCCTACAGCGCGCCGAAGACCTTCTTGGCCAGGCTGGTAGCCGCCGCTGCCGGGTTCTGGCGAATGTTCTGCTCCTGTTTGCCGATCATCTCGAACA  >  NC_002947/1724281‑1724576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.