New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2051617 =	42 (0.830)	6 (0.120)	6/250	NT	12.9%	coding (62/591 nt)	PP_1826	isochorismatase family hydrolase
	?	NC_002947	2051652 =	40 (0.820)					coding (27/591 nt)	PP_1826	isochorismatase family hydrolase

GCGAACATGGATGATCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGT  >  NC_002947/2051472‑2051765                                                                                                                                                  |                                                                                                                                                     gCGAACATGGATGATCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCt                                                                                                                                                     >  6:321882/1‑147 (MQ=255)  ccttgcccaaaggctagccacaggccagtaaccacgccgcttgcgttgtcaaccattcccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCa                                                                                                                                                   >  2:152988‑M1/145‑148 (MQ=255)   gAACATGGATGATCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGc                                                                                                                                                 >  1:214923/1‑149 (MQ=255)       aTGGATGATCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTAGCTCAGCTTgg                                                                                                                                             >  1:271718/1‑149 (MQ=255)           atgatCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCcgg                                                                                                                                         >  6:192386/1‑149 (MQ=255)                 ggACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGa                                                                                                                                     >  5:297702/1‑147 (MQ=255)                 ggACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATa                                                                                                                                   <  4:105816/149‑1 (MQ=255)                     ggCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTcg                                                                                                                               >  1:81162/1‑149 (MQ=255)                       ccGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTcgcg                                                                                                                             <  2:242165/149‑1 (MQ=255)                       aggccagtaaccacgccgcttgcgttgtcaaccatttccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCA‑CT‑GGCCGGCGGATAGTCGCGGc                                                                                                                           >  2:125388‑M1/124‑149 (MQ=255)                           ttttACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGc                                                                                                                           >  1:234714/1‑147 (MQ=255)                           ttttACCGGCGGCGTCGAGCAACCTGGCGATGTTGCCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACACCATTTGTGCATCGATGATCATCAGGCAGGCCTCGCTCACCTTCGCCGGCGGATAGTCGCGGcc                                                                                                                          >  4:197381/1‑148 (MQ=255)                                cGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAg                                                                                                                    <  2:234714/149‑1 (MQ=255)                                cGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAg                                                                                                                    <  2:214923/149‑1 (MQ=255)                                   gcggcgTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGc                                                                                                                  >  2:105341/1‑148 (MQ=255)                                         tCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACAt                                                                                                           >  7:57553/1‑149 (MQ=255)                                            gcgttgtcaaccattcccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATc                                                                                                          >  6:273070‑M1/103‑147 (MQ=255)                                            aGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGt                                                                                                        >  3:281810/1‑149 (MQ=255)                                             gCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTg                                                                                                       <  5:321882/149‑1 (MQ=255)                                                 ccTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTg                                                                                                   <  2:115745/149‑1 (MQ=255)                                                    aaccattcccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCA‑CT‑GGCCGGCGGATAGTCGCGGCCAGTGAg                                                                                                                    <  8:111377‑M1/33‑1 (MQ=255)                                                    aaccattcccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCA‑CT‑GGCCGGCGGATAGTCGCGGCCAGTGAg                                                                                                                    >  7:111377‑M1/95‑127 (MQ=255)                                                       gATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACgg                                                                                             >  3:251985/1‑149 (MQ=255)                                                       gATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATAGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACg                                                                                              >  5:243852/1‑148 (MQ=255)                                                             ggCCACGGCCTTGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATc                                                                                        >  6:139683/1‑148 (MQ=255)                                                               ccACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAg                                                                                     <  2:81162/149‑1 (MQ=255)                                                               caaCGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAg                                                                                     >  6:147621/3‑149 (MQ=255)                                                                             aTGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAg                                                                       <  6:297702/149‑1 (MQ=255)                                                                                cccGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAggg                                                                     <  5:192386/148‑1 (MQ=255)                                                                                 ccGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCt                                                                   >  7:69897/1‑149 (MQ=255)                                                                                  cGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCtt                                                                  >  2:239442/1‑149 (MQ=255)                                                                                    aCAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTc                                                                                                                                >  2:86892/1‑85 (MQ=255)                                                                                    aCAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTc                                                                                                                                <  1:86892/85‑1 (MQ=255)                                                                                           ctggggACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGGTGAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATAc                                                          <  3:197381/146‑1 (MQ=255)                                                                                           cAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATAc                                                          <  6:113642/148‑1 (MQ=255)                                                                                             caaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCAGCTTGGCCGGCGGATAGTcgc                                                                                                                              >  7:291086‑M1/54‑78 (MQ=255)                                                                                             caaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCAGCTTGGCCGGCGGATAGTcgc                                                                                                                              <  8:291086‑M1/25‑1 (MQ=255)                                                                                                   cACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTcc                                                 >  7:211254/1‑149 (MQ=255)                                                                                                        aGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGc                                            >  7:45520/1‑149 (MQ=255)                                                                                                          gTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCt                                          <  2:271718/149‑1 (MQ=255)                                                                                                              tCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGgc                                      <  8:57553/149‑1 (MQ=255)                                                                                                               ccTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGgcg                                     >  5:18625/1‑149 (MQ=255)                                                                                                                 ttttGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTccc                                                <  4:221754/136‑1 (MQ=255)                                                                                                                 ttttGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTccc                                                >  3:221754/1‑136 (MQ=255)                                                                                                                     gtgCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAAt                                <  5:147621/148‑1 (MQ=255)                                                                                                                      tgCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATg                               <  8:69897/148‑1 (MQ=255)                                                                                                                          tCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAAt                          <  4:281810/149‑1 (MQ=255)                                                                                                                            gatgatgatCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATgg                        >  4:48573/1‑149 (MQ=255)                                                                                                                               gatgatCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGtc                      <  6:18625/148‑2 (MQ=255)                                                                                                                                        gCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGGTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACACCGc              >  7:251023/1‑147 (MQ=255)                                                                                                                                               tGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGTCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGt     <  8:211254/149‑1 (MQ=255)                                                                                                                                               tGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGt     <  4:251985/149‑1 (MQ=255)                                                                                                                                                  CTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGt  <  7:271133‑M1/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCGAACATGGATGATCGGACGGCCGCTTTTACGGGCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGT  >  NC_002947/2051472‑2051765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.