New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2051617 =	42 (0.830)	6 (0.120)	6/250	NT	12.9%	coding (62/591 nt)	PP_1826	isochorismatase family hydrolase
	?	NC_002947	2051652 =	40 (0.820)					coding (27/591 nt)	PP_1826	isochorismatase family hydrolase

GCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAGCCTTTGGGCAAGG  >  NC_002947/2051506‑2051795                                                                                                                                                   |                                                                                                                                                gcggcgTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGc                                                                                                                                                >  2:105341/1‑148 (MQ=255)       tCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACAt                                                                                                                                         >  7:57553/1‑149 (MQ=255)          gcgttgtcaaccattcccattggcgccaaggcaggggagaataggtatacaaaagccctatccaaggagcccttgatgtccgttccaaccacgatgtttcgcCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATc                                                                                                                                        >  6:273070‑M1/103‑147 (MQ=255)          aGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGt                                                                                                                                      >  3:281810/1‑149 (MQ=255)           gCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTg                                                                                                                                     <  5:321882/149‑1 (MQ=255)               ccTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTg                                                                                                                                 <  2:115745/149‑1 (MQ=255)                     gATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACgg                                                                                                                           >  3:251985/1‑149 (MQ=255)                     gATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATAGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACg                                                                                                                            >  5:243852/1‑148 (MQ=255)                           ggCCACGGCCTTGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATc                                                                                                                      >  6:139683/1‑148 (MQ=255)                             ccACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAg                                                                                                                   <  2:81162/149‑1 (MQ=255)                             caaCGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAg                                                                                                                   >  6:147621/3‑149 (MQ=255)                                           aTGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAg                                                                                                     <  6:297702/149‑1 (MQ=255)                                              cccGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAggg                                                                                                   <  5:192386/148‑1 (MQ=255)                                               ccGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCt                                                                                                 >  7:69897/1‑149 (MQ=255)                                                cGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCtt                                                                                                >  2:239442/1‑149 (MQ=255)                                                         ctggggACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGGTGAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATAc                                                                                        <  3:197381/146‑1 (MQ=255)                                                         cAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATAc                                                                                        <  6:113642/148‑1 (MQ=255)                                                                 cACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTcc                                                                               >  7:211254/1‑149 (MQ=255)                                                                      aGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGc                                                                          >  7:45520/1‑149 (MQ=255)                                                                        gTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCt                                                                        <  2:271718/149‑1 (MQ=255)                                                                            tCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGgc                                                                    <  8:57553/149‑1 (MQ=255)                                                                             ccTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGgcg                                                                   >  5:18625/1‑149 (MQ=255)                                                                               ttttGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTccc                                                                              >  3:221754/1‑136 (MQ=255)                                                                               ttttGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTccc                                                                              <  4:221754/136‑1 (MQ=255)                                                                                   gtgCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAAt                                                              <  5:147621/148‑1 (MQ=255)                                                                                    tgCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATg                                                             <  8:69897/148‑1 (MQ=255)                                                                                        tCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAAt                                                        <  4:281810/149‑1 (MQ=255)                                                                                          gatgatgatCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATgg                                                      >  4:48573/1‑149 (MQ=255)                                                                                             gatgatCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGtc                                                    <  6:18625/148‑2 (MQ=255)                                                                                                      gatgtttcgcctcactggccgcgactatccgccggccaagctgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGc                                            >  6:273070‑M2/46‑147 (MQ=255)                                                                                                      gCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGGTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACACCGc                                            >  7:251023/1‑147 (MQ=255)                                                                                                             tGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGTCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGt                                   <  8:211254/149‑1 (MQ=255)                                                                                                             tGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGt                                   <  4:251985/149‑1 (MQ=255)                                                                                                                CTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGt                                <  7:271133‑M1/149‑1 (MQ=255)                                                                                                                  ctcactggccgcgactatccgccggccagtgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGtt                                                    <  8:111377‑M2/94‑1 (MQ=255)                                                                                                                  ctcactggccgcgactatccgccggccagtgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGtt                                                    >  7:111377‑M2/34‑127 (MQ=255)                                                                                                                  CAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTa                              <  7:72857‑M1/149‑1 (MQ=255)                                                                                                                     cTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACAGCAAGCGCTCCTTGGATAGGGCTTTTGTATACCTAATCTCCCCTGCCTTGGAGCCAATGGGAATGGTTGACAAAGCAAGAGGCGTGGTTACTg                           >  7:280906/1‑149 (MQ=255)                                                                                                                        ggCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTgg                          <  1:239442/147‑1 (MQ=255)                                                                                                                         gccgcgactatccgccggccagtgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGAAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCt                       >  2:125388‑M2/27‑149 (MQ=255)                                                                                                                          gcgactatccgccggccaagctgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTg                                                                                             >  7:291086‑M2/26‑78 (MQ=255)                                                                                                                          gcgactatccgccggccaagctgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTg                                                                                             <  8:291086‑M2/53‑1 (MQ=255)                                                                                                                          ccGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTTTACCTATTCTCCCATGCCTTGGCGCCTATGCGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCtg                      >  7:240906/1‑149 (MQ=255)                                                                                                                           cggcggATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGc                                            <  4:182099/126‑1 (MQ=255)                                                                                                                           cggcggATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGc                                            >  3:182099/1‑126 (MQ=255)                                                                                                                                gATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCGCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTa                >  2:91050/1‑149 (MQ=255)                                                                                                                                 aTAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAg               <  8:72857/149‑1 (MQ=255)                                                                                                                                     tCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCtgt                     >  2:69692/1‑139 (MQ=255)                                                                                                                                     tCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCtgt                     <  1:69692/139‑1 (MQ=255)                                                                                                                                     tCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAGCCtt           >  1:309585/1‑149 (MQ=255)                                                                                                                                             aGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTAATCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAGCCTTTGggcaag   <  1:105341/149‑1 (MQ=255)                                                                                                                                               tgagGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAGCCTTTGggcaagg  >  2:152988‑M2/5‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCGGCGTCGAGCAACCTGGCGATGTTGGCCACGGCCTCGTCCATGCCCGACAGCTTCAGGGGACCACTGAGGTACTCCTTTTGTGCATCGATGATGATCAGGCTGGCGTGGCTCAGCTTGGCCGGCGGATAGTCGCGGCCAGTGAGGCGAAACATCGTGGTTGGAACGGACATCAAGGGCTCCTTGGATAGGGCTTTTGTATACCTATTCTCCCCTGCCTTGGCGCCAATGGGAATGGTTGACAACGCAAGCGGCGTGGTTACTGGCCTGTGGCTAGCCTTTGGGCAAGG  >  NC_002947/2051506‑2051795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.