New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2420112	58 (1.150)	4 (0.080)	4/250	NT	6.4%	coding (1263/1668 nt)	ctpH	methyl‑accepting chemotaxis protein CtpH
	?	NC_002947	= 2420145	60 (1.230)					coding (1296/1668 nt)	ctpH	methyl‑accepting chemotaxis protein CtpH

TAATTCGCGATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGCCAGGAAGGGGC  >  NC_002947/2419970‑2420258                                                                                                                                               |                                                                                                                                                   tAATTCGCGATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTc                                                                                                                                              <  7:305131/149‑1 (MQ=255)    ttCGCGATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAAGAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGcc                                                                                                                                           <  6:150200/149‑1 (MQ=255)    ttCGCGATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGcc                                                                                                                                           <  1:211546/149‑1 (MQ=255)      cgcgATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCgg                                                                                                                                                   >  7:3331/1‑139 (MQ=255)      cgcgATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCgg                                                                                                                                                   <  8:3331/139‑1 (MQ=255)      cgcgATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCg                                                                                                                                          <  1:293456/148‑1 (MQ=255)      cgcgATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGa                                                                                                                                         >  7:269405/1‑149 (MQ=255)                  cATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAg                                                                                                                             >  2:81130/1‑149 (MQ=255)                           acacGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGctgggccaggctacgcacttcatcggcgacca                                                                                                                    >  4:115663‑M1/1‑117 (MQ=255)                           acacGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGcc                                                                                                                      >  1:251359/1‑147 (MQ=255)                               ggATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGcg                                                                                                                 <  3:228637‑M2/148‑3 (MQ=255)                                  tAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGctgggccaggctacgcacttcatcggcgaccaccgcaaa                                                                                                             <  3:115663‑M1/149‑40 (MQ=255)                                    ggCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGc                                                                                                           <  1:81130/149‑1 (MQ=255)                                          gTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTc                                                                                                     >  3:205781/1‑149 (MQ=255)                                           tGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTTCGcggggccaggctacgcacttcatcggcgaccaccccaaaaccacacat                                                                                                    >  5:52756‑M1/1‑101 (MQ=255)                                           tGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGctgggccaggctacgcacttcatcggcgaccaccgcaaaacca                                                                                                         <  6:52756‑M1/144‑44 (MQ=255)                                             cTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGAt                                                                                                  <  4:229081/149‑1 (MQ=255)                                                gAAGTGATCCGCTGCATTGCTGAACAGACCCACCTGCTGGCGCTTACCGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGAtt                                                                                                 <  1:304782/147‑1 (MQ=255)                                                gAAGGGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGc                                                                                               <  4:110878/149‑1 (MQ=255)                                                    tGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGa                                                                                                   <  2:290879/141‑1 (MQ=255)                                                    tGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGa                                                                                                   >  1:290879/1‑141 (MQ=255)                                                      aTCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAAt                                                                                         >  4:293490/1‑149 (MQ=255)                                                       tCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGAGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAAt                                                                                         <  7:208057/148‑1 (MQ=255)                                                            ggCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCa                                                                                   <  4:228637/149‑1 (MQ=255)                                                                    tGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGatcatc                                                                            >  7:160065/1‑148 (MQ=255)                                                                         aGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGATGCg                                                                      >  4:265677/1‑149 (MQ=255)                                                                         aGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCg                                                                      >  7:148552/1‑149 (MQ=255)                                                                         aGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCg                                                                      >  5:104519/1‑149 (MQ=255)                                                                          gACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCgg                                                                     <  8:148552/149‑1 (MQ=255)                                                                                ccTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGAGAAGCCGGGCGTGGTTTTGAGCTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGAGTCGATTGCAGAAATTAACCAGATCATCGAAGCCGTACAg                                                                >  7:131589/1‑148 (MQ=38)                                                                                 ctgctgGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGt                                                               >  4:205375/1‑148 (MQ=255)                                                                                     tgGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAggg                                                          >  4:55083/1‑149 (MQ=255)                                                                                         gcTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCg                                                                           >  5:101096/1‑128 (MQ=255)                                                                                         gcTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCg                                                                           <  6:101096/128‑1 (MQ=255)                                                                                         gcTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGTGGCtg                                                      <  3:55083/149‑1 (MQ=255)                                                                                             aaCGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCtgtg                                                    <  4:205781/147‑1 (MQ=255)                                                                                                  ggCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGCCAGTGGAGGCgg                                             >  6:265844/1‑149 (MQ=255)                                                                                                     cATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTc                                           >  8:55404/1‑148 (MQ=255)                                                                                                          aaGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAg                                                            <  4:268994/126‑1 (MQ=255)                                                                                                          aaGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAg                                                            >  3:268994/1‑126 (MQ=255)                                                                                                          aaGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGc                                      >  4:136240/1‑148 (MQ=255)                                                                                                           aGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCa                                    >  7:105595/1‑149 (MQ=255)                                                                                                               gCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGt                                            <  5:87238/137‑1 (MQ=255)                                                                                                               gCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGt                                            >  6:87238/1‑137 (MQ=255)                                                                                                                cccGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGt                                                                    <  6:185159/112‑1 (MQ=255)                                                                                                                cccGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGt                                                                    >  5:185159/1‑112 (MQ=255)                                                                                                                cccGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCg                                              <  4:76362/134‑1 (MQ=255)                                                                                                                cccGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCg                                              >  3:76362/1‑134 (MQ=255)                                                                                                                 ccGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGaaa                              <  7:55404/149‑1 (MQ=255)                                                                                                                    tGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGTTCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTg                           <  8:269405/149‑1 (MQ=255)                                                                                                                     gCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTgg                                                   <  6:123247/124‑1 (MQ=255)                                                                                                                     gCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTgg                                                   >  5:123247/1‑124 (MQ=255)                                                                                                                     gCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGt                            >  2:318923/1‑147 (MQ=255)                                                                                                                     gCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGt                            <  1:318923/147‑1 (MQ=255)                                                                                                                     gCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTgg                          >  5:297520/1‑149 (MQ=255)                                                                                                                      cTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGc                         <  3:205375/149‑1 (MQ=255)                                                                                                                         gCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAg                      >  8:151828/1‑149 (MQ=255)                                                                                                                         gCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCG‑AAGTGGCCAg                      >  2:35039/1‑148 (MQ=255)                                                                                                                           gAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGc                                                                                                        >  5:111162/1‑65 (MQ=255)                                                                                                                           gAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGc                                                                                                        <  6:111162/65‑1 (MQ=255)                                                                                                                                cGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACgg                                                                                                            >  7:57369/1‑56 (MQ=255)                                                                                                                                cGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACgg                                                                                                            <  8:57369/56‑1 (MQ=255)                                                                                                                                 atgtgtggtTTTGGGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCCGcgaaaaaccacgcccggcttcgccagcacgggccgcttcgatggccgcgttaagcgccagcaggttggtctgttcagcaatgccgcggatcacttccagca              >  5:52756‑M2/5‑48 (MQ=255)                                                                                                                                   gCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGcc            <  7:151828/149‑1 (MQ=255)                                                                                                                                    cGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGCCa           <  6:297520/149‑1 (MQ=255)                                                                                                                                      tGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGcgcaaaaccacgcccggcttcgccagcacgggccgcttcgatggccgcgttaagcgccagcaggttggtctgttcagcaatgccgcggatcacttccagca              <  6:52756‑M2/144‑102 (MQ=255)                                                                                                                                        gTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGCCAGGa        <  8:105595/148‑1 (MQ=255)                                                                                                                                          tttGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGcgcaaaaccacgcccggcttcgccagcacgggccgcttcgatggccgcgttaagcgccagcaggttggtctgttcagcaatgccgcggatcacttccagcactttgccta     <  3:115663‑M2/149‑111 (MQ=255)                                                                                                                                            tGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGCCAGGAAggg    <  2:251359/148‑1 (MQ=255)                                                                                                                                              cgctgggccaggctacgcacttcatcggcgaccaccgcaaaaccacgcccggcttcgccagcacgggccgcttcgatggccgcgttaagcgccagcaggttggtctgttcagcaatgccgcggatcacttccagcactttgcctatcc  <  3:228637‑M1/148‑147 (MQ=255)                                                                                                                                               |                                                                                                                                                   TAATTCGCGATCTGGAGCATGACAGCACACGGATAGGCAAAGTGCTGGAAGTGATCCGCGGCATTGCTGAACAGACCAACCTGCTGGCGCTTAACGCGGCCATCGAAGCGGCCCGTGCTGGCGAAGCCGGGCGTGGTTTTGCGGTGGTCGCCGATGAAGTGCGTAGCCTGGCCCAGCGCACGGCAGCGTCGATTGCAGAAATTCACCAGATCATCGAAGCGGTACAGTCAGGGGCTGTGGAGGCGGTCAAGGCCATCGAAAGTGGCCAGCAACGTAGCCAGGAAGGGGC  >  NC_002947/2419970‑2420258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.