New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2619995 =	40 (0.790)	6 (0.120)	4/246	NT	14.6%	coding (535/1689 nt)	PP_2293	DNA maturase B
	?	NC_002947	2620031 =	32 (0.670)					coding (571/1689 nt)	PP_2293	DNA maturase B

AGTCCCCCTCGGTTAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCA  >  NC_002947/2619849‑2620143                                                                                                                                                    |                                                                                                                                                      aGTCCCCCTCGGTTAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGAt                                                                                                                                                     <  4:80337/149‑1 (MQ=255)        cTCGGTTAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATAATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATc                                                                                                                                               >  4:241927/1‑148 (MQ=255)         tCGGTTAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCAGAACA‑ACTCTGACACGCAGATGATTCGTGACAAGCTGTCCGAGGACGTCAAGGAATTCGATGCGATCCt                                                                                                                                             >  7:257082/1‑149 (MQ=255)             ttAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATAATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGAAGCGATACTCaac                                                                                                                                         >  4:163593/1‑148 (MQ=255)               aaGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGc                                                                                                                                        <  3:179187/148‑1 (MQ=255)                         gCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCg                                                                                                                             <  7:241724/149‑1 (MQ=255)                          catcatGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCgg                                                                                                                            <  3:241927/149‑1 (MQ=255)                                 ggTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcat                                                                                                                     >  1:170887/1‑149 (MQ=255)                                    gcggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatca                                                                                                                   <  4:121056‑M1/37‑1 (MQ=255)                                    gcggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatca                                                                                                                   <  4:116512‑M1/37‑1 (MQ=255)                                      ggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCAtt                                                                                                                 >  3:121056‑M1/111‑149 (MQ=255)                                      ggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCAtt                                                                                                                 >  3:116512‑M1/111‑149 (MQ=255)                                          aCTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCa                                                                                                                                 <  1:89646/128‑1 (MQ=255)                                          aCTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCa                                                                                                                                 >  2:89646/1‑128 (MQ=255)                                              gCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTggg                                                                                                         <  6:16755/148‑1 (MQ=255)                                                tCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGACCGAGGCCGTGAAGGAATTCGATg                                                                                                                                                    >  8:16718/1‑103 (MQ=255)                                                      gCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATACTCAAGCCGCTTCAGTCGGAACGCATCATTTACCTGGGGACGcat                                                                                                  >  5:272804/1‑145 (MQ=255)                                                          aCATCATCATTGCGGACGAGATCGAACTCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGATGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGc                                                                                            <  8:257082/149‑1 (MQ=255)                                                          aCATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGt                                                                                              <  2:170887/147‑1 (MQ=255)                                                            atcatcatTGCGGACGACATCGAAATCCCGAACC‑ACTCTGCCACGCAGATGATGCGAGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCga                                                                                          <  3:264929/149‑1 (MQ=255)                                                            atcatcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTgg                                                                                                          >  6:242575/1‑133 (MQ=255)                                                            atcatcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTgg                                                                                                          <  5:242575/133‑1 (MQ=255)                                                              catcatTGCGGACGACATCGAAATCCCGAACATACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGc                                                                                            >  1:39321/1‑146 (MQ=255)                                                               atcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGc                                                                                                                                     <  2:90335/103‑1 (MQ=255)                                                               atcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGc                                                                                                                                     >  1:90335/1‑103 (MQ=255)                                                                       ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCgag                                                                                         <  2:162179/139‑1 (MQ=255)                                                                       ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCgag                                                                                         >  1:162179/1‑139 (MQ=255)                                                                       ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCtt                                                                                 <  7:73460/147‑1 (MQ=255)                                                                       ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCtt                                                                                 >  8:73460/1‑147 (MQ=255)                                                                       ggACGACATCGAAATCCCGAACA‑ACTCTGACACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGt                                                                               <  3:163593/149‑1 (MQ=255)                                                                       cacacacggatttcatagccgcgcacggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatc                                                                                                                    >  3:147778‑M1/78‑113 (MQ=255)                                                                       cacacacggatttcatagccgcgcacggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatc                                                                                                                    <  4:147778‑M1/36‑1 (MQ=255)                                                                             cATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGa                                                                                                                                                 <  2:47578/77‑1 (MQ=255)                                                                             cATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGa                                                                                                                                                 >  1:47578/1‑77 (MQ=255)                                                                              aTCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCg                                                                        >  1:308801/1‑149 (MQ=255)                                                                              aTCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCACAGTGCGCGAAGTCCTGGTACAACCg                                                                        >  3:89249/1‑149 (MQ=255)                                                                               tCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCTAGATGTCCTTGTACAACCgg                                                                       <  3:154697/149‑1 (MQ=255)                                                                                        cGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAg                                                              >  8:78467/1‑149 (MQ=255)                                                                                                       aCGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAAt                                               >  2:57704/1‑149 (MQ=255)                                                                                                           aGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCgt                                           <  2:308801/149‑1 (MQ=255)                                                                                                                     tGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑a                                                  <  2:163274/132‑1 (MQ=255)                                                                                                                     tGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑a                                                  >  1:163274/1‑132 (MQ=255)                                                                                                                              gTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATc                        >  5:49318/1‑149 (MQ=255)                                                                                                                                 cGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGa                     <  6:98997/149‑1 (MQ=255)                                                                                                                                   aGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGaca                   <  6:49318/149‑1 (MQ=255)                                                                                                                                   aGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGaca                   <  2:39321/149‑1 (MQ=255)                                                                                                                                           aaGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATGAAAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAg             <  1:57704/148‑1 (MQ=255)                                                                                                                                            aGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAg          <  7:78467/149‑1 (MQ=255)                                                                                                                                                aTTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGa            <  2:2126/143‑1 (MQ=255)                                                                                                                                                aTTCGATGCGATCATCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGa            >  1:2126/1‑143 (MQ=255)                                                                                                                                                    GATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCGGACACTCCAGAAGGTGCCGCa  <  3:16240‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AGTCCCCCTCGGTTAAGTCCGTGGGCATCATGGGTCAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCA  >  NC_002947/2619849‑2620143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.