New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2619995 =	40 (0.790)	6 (0.120)	4/246	NT	14.6%	coding (535/1689 nt)	PP_2293	DNA maturase B
	?	NC_002947	2620031 =	32 (0.670)					coding (571/1689 nt)	PP_2293	DNA maturase B

CAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAGGCAGCCTGGCCCCATTCATCA  >  NC_002947/2619884‑2620172                                                                                                                                                     |                                                                                                                                               gcggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatca                                                                                                                                                <  4:116512‑M1/37‑1 (MQ=255) gcggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGcatca                                                                                                                                                <  4:121056‑M1/37‑1 (MQ=255)   ggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCAtt                                                                                                                                              >  3:121056‑M1/111‑149 (MQ=255)   ggcaccttctggagtgtcggatacagcgcgggccacacacggatttcatagccgcgctcggggagccggttgtacaaggacatctcgcactgaggcgtccccaggtaaatGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCAtt                                                                                                                                              >  3:116512‑M1/111‑149 (MQ=255)           gCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTggg                                                                                                                                      <  6:16755/148‑1 (MQ=255)                   gCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATACTCAAGCCGCTTCAGTCGGAACGCATCATTTACCTGGGGACGcat                                                                                                                               >  5:272804/1‑145 (MQ=255)                       aCATCATCATTGCGGACGAGATCGAACTCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGATGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGc                                                                                                                         <  8:257082/149‑1 (MQ=255)                       aCATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGt                                                                                                                           <  2:170887/147‑1 (MQ=255)                         atcatcatTGCGGACGACATCGAAATCCCGAACC‑ACTCTGCCACGCAGATGATGCGAGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCga                                                                                                                       <  3:264929/149‑1 (MQ=255)                         atcatcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTgg                                                                                                                                       <  5:242575/133‑1 (MQ=255)                         atcatcatTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTgg                                                                                                                                       >  6:242575/1‑133 (MQ=255)                           catcatTGCGGACGACATCGAAATCCCGAACATACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGc                                                                                                                         >  1:39321/1‑146 (MQ=255)                                    ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCgag                                                                                                                      >  1:162179/1‑139 (MQ=255)                                    ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCgag                                                                                                                      <  2:162179/139‑1 (MQ=255)                                    ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCtt                                                                                                              <  7:73460/147‑1 (MQ=255)                                    ggACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCtt                                                                                                              >  8:73460/1‑147 (MQ=255)                                    ggACGACATCGAAATCCCGAACA‑ACTCTGACACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGt                                                                                                            <  3:163593/149‑1 (MQ=255)                                           aTCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCg                                                                                                     >  1:308801/1‑149 (MQ=255)                                           aTCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCACAGTGCGCGAAGTCCTGGTACAACCg                                                                                                     >  3:89249/1‑149 (MQ=255)                                            tCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCTAGATGTCCTTGTACAACCgg                                                                                                    <  3:154697/149‑1 (MQ=255)                                                     cGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAg                                                                                           >  8:78467/1‑149 (MQ=255)                                                                    aCGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAAt                                                                            >  2:57704/1‑149 (MQ=255)                                                                        aGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCgt                                                                        <  2:308801/149‑1 (MQ=255)                                                                                  tGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑a                                                                               >  1:163274/1‑132 (MQ=255)                                                                                  tGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑a                                                                               <  2:163274/132‑1 (MQ=255)                                                                                           gTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATc                                                     >  5:49318/1‑149 (MQ=255)                                                                                              cGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGa                                                  <  6:98997/149‑1 (MQ=255)                                                                                                aGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGaca                                                <  6:49318/149‑1 (MQ=255)                                                                                                aGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGaca                                                <  2:39321/149‑1 (MQ=255)                                                                                                        aaGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATGAAAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAg                                          <  1:57704/148‑1 (MQ=255)                                                                                                         aGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAg                                       <  7:78467/149‑1 (MQ=255)                                                                                                             aTTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGa                                         <  2:2126/143‑1 (MQ=255)                                                                                                             aTTCGATGCGATCATCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGa                                         >  1:2126/1‑143 (MQ=255)                                                                                                              aatgatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGcc                                  >  3:121056‑M2/40‑149 (MQ=255)                                                                                                              aatgatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGcc                                  >  3:116512‑M2/40‑149 (MQ=255)                                                                                                                tgatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGc                                <  4:121056‑M2/112‑1 (MQ=255)                                                                                                                tgatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGc                                <  4:116512‑M2/112‑1 (MQ=255)                                                                                                                 gatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGTGCGCGGCTATG‑AAATCCGtgtgtg                                                                   >  3:147778‑M2/37‑113 (MQ=255)                                                                                                                 gatgcgtgccgactgaagcggcttgaggatcgcatcATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGTGCGCGGCTATG‑AAATCCGtgtgtg                                                                   <  4:147778‑M2/77‑1 (MQ=255)                                                                                                                 GATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCGGACACTCCAGAAGGTGCCGCa                               <  3:16240‑M1/149‑1 (MQ=255)                                                                                                                          cTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCGGACACTCCAGAAGGTGCCGCACTACAAAg                       <  4:16240/148‑1 (MQ=255)                                                                                                                            cAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAgg                      >  3:19146/1‑147 (MQ=255)                                                                                                                                     tCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAGGCAGCCTGGccc           >  4:44935/1‑149 (MQ=255)                                                                                                                                           ggCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAGGCAGCCTGGCCCCATtca     <  3:44935/149‑1 (MQ=255)                                                                                                                                              aCGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAGGCAGCCTGGCCCCATtcatca  >  3:167424/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               CAGATCACTGGCTCCCGTGCTGACATCATCATTGCGGACGACATCGAAATCCCGAACA‑ACTCTGCCACGCAGATGATGCGTGACAAGCTGTCCGAGGCCGTGAAGGAATTCGATGCGATCCTCAAGCCGCTTCAGTCGGCACGCATCATTTACCTGGGGACGCCTCAGTGCGAGATGTCCTTGTACAACCGGCTCCCCGAGCGCGGCTATG‑AAATCCGTGTGTGGCCCGCGCTGTATCCGACACTCCAGAAGGTGCCGCACTACAAAGGCAGCCTGGCCCCATTCATCA  >  NC_002947/2619884‑2620172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.