New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2873270 =	43 (0.850)	3 (0.060)	3/242	NT	7.4%	coding (50/474 nt)	cigR	membrane protein
	?	NC_002947	2873328 =	35 (0.740)					coding (108/474 nt)	cigR	membrane protein

CCTGCCTTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCA  >  NC_002947/2873123‑2873417                                                                                                                                                    |                                                                                                                                                    ctgcggtggccaccgaggatgcccagtacatcgccacggtcgatggacgggccgccgtgccagtcattgccgccggcgctctgctggtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgacc                                                                                                                                                    >  8:206441‑M1/148‑149 (MQ=255) cctgcctTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggc                                                                                                                                                     <  7:262140/148‑1 (MQ=255)    gcctTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttg                                                                                                                                                 >  5:99865/1‑149 (MQ=255)    cggtggccaccgaggatgcccagtacatcgccacggtcgatggacgtgccgccgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCt                                                                                                                                                   >  5:60762‑M1/145‑147 (MQ=255)        tGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttggcct                                                                                                                                             >  8:71329/1‑149 (MQ=255)            aGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTg                                                                                                                                          <  7:71329/148‑1 (MQ=255)                              tgctgcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGAccc                                                                                                                       >  3:13667/1‑149 (MQ=255)                                ctgcGAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGAGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCgg                                                                                                                     <  3:15112/149‑1 (MQ=255)                                ctgcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCgg                                                                                                                     <  6:324286/149‑1 (MQ=255)                                 tgcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttggc                                                                                                                                               >  3:208358/1‑122 (MQ=255)                                 tgcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttggc                                                                                                                                               <  4:208358/122‑1 (MQ=255)                                  gcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCggg                                                                                                                    >  8:121293/1‑148 (MQ=255)                                    aaGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTaa                                                                                                                 >  6:125457/1‑149 (MQ=255)                                    aaGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTaa                                                                                                                 >  3:9616/1‑149 (MQ=255)                                       tGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATgg                                                                                                              >  5:260846/1‑149 (MQ=255)                                           gCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCaaa                                                                                                          <  7:118175/149‑1 (MQ=255)                                            cAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAg                                                                                                         <  8:100239/149‑1 (MQ=255)                                            cAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAg                                                                                                         <  6:99865/149‑1 (MQ=255)                                               gCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGc                                                                                                       >  8:279531/1‑148 (MQ=255)                                               acgggccgccgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGc                                                                                                       <  5:203671‑M1/47‑1 (MQ=255)                                                cGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCa                                                                                                     <  5:291892/149‑1 (MQ=255)                                                  tGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAgg                                                                                                   <  2:210001/149‑1 (MQ=255)                                                    cgcACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGc                                                                                                 <  7:279531/149‑1 (MQ=255)                                                    cgcACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGc                                                                                                 <  5:166185/149‑1 (MQ=255)                                                       ccgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCaa                                                                                              >  2:322314‑M1/94‑149 (MQ=255)                                                        cgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAg                                                                                             >  6:203671‑M1/93‑149 (MQ=255)                                                          gTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt                                                                                           <  6:260846/149‑1 (MQ=255)                                                            ccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCt                                                                                                                                                   >  7:156027‑M1/89‑91 (MQ=255)                                                            ccagtcattgccgccggcgctctgcttgtggccgcccgaattgccctggccctgggcgtgcggcgcctggcccttgccgtgcccctgaCCt                                                                                                                                                   <  8:156027‑M1/3‑1 (MQ=255)                                                                  tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGc                                                                                                                             <  6:22636/107‑1 (MQ=255)                                                                  tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGc                                                                                                                             >  5:22636/1‑107 (MQ=255)                                                                  tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa                                                                                   >  3:140282/1‑149 (MQ=255)                                                                  tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa                                                                                   >  2:143357/1‑149 (MQ=255)                                                                   gtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCAc                                                                                  >  4:44485/1‑149 (MQ=255)                                                                    tgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACg                                                                                 <  8:33805/149‑1 (MQ=255)                                                                          aaCCTCTCGCGCAAATGATGCTCACATGACCACATCACCAATAATGACAGCCGTTGTCACCTCTTTTGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAgg                                                                           <  8:49601/149‑1 (MQ=255)                                                                          aaCCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAgg                                                                           <  3:44485/149‑1 (MQ=255)                                                                                             gCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGAGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGcc                                                          >  2:173196/1‑147 (MQ=255)                                                                                                  caTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt                                                                                           <  8:249218/109‑1 (MQ=255)                                                                                                  caTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt                                                                                           >  7:249218/1‑109 (MQ=255)                                                                                                      gCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACTGCAAGGGCCAGGCGCCGCACGCccagggccagg                                                <  1:173196/148‑1 (MQ=255)                                                                                                                   tCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGcgcc                                                                 >  6:54712/1‑118 (MQ=255)                                                                                                                   tCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGcgcc                                                                 <  5:54712/118‑1 (MQ=255)                                                                                                                       gACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCcac                               >  3:37421/1‑148 (MQ=255)                                                                                                                        aCAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACaa                             <  1:143357/149‑1 (MQ=255)                                                                                                                            ccGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTACGGTGCTCGCCGACACGGGTAATGGCAAATGCCAGGGCAAAGGTCAGGGGAACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCTGCCACAAg                            >  7:143920/1‑146 (MQ=255)                                                                                                                               ttGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAgc                      <  5:125457/149‑1 (MQ=255)                                                                                                                                     ccTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggc                >  5:289415/1‑149 (MQ=255)                                                                                                                                      cTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggcg               >  6:71549/1‑149 (MQ=255)                                                                                                                                         aTTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAA‑GCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCaa           <  4:13667/149‑1 (MQ=255)                                                                                                                                          ttGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCaa           <  7:121293/149‑1 (MQ=255)                                                                                                                                             gCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGa        >  3:146662/1‑149 (MQ=255)                                                                                                                                               ggTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACt      <  5:71549/149‑1 (MQ=255)                                                                                                                                                   gccttggcctCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCa  >  1:318513/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCTGCCTTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCA  >  NC_002947/2873123‑2873417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.