| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2873270 = | 43 (0.850) | 3 (0.060) | 3/242 | NT | 7.4% | coding (50/474 nt) | cigR | membrane protein |
| ? | NC_002947 | 2873328 = | 35 (0.740) | coding (108/474 nt) | cigR | membrane protein | |||||
GTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAG > NC_002947/2873180‑2873474 | gTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt < 6:260846/149‑1 (MQ=255) tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa > 2:143357/1‑149 (MQ=255) tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa > 3:140282/1‑149 (MQ=255) gtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCAc > 4:44485/1‑149 (MQ=255) tgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACg < 8:33805/149‑1 (MQ=255) aaCCTCTCGCGCAAATGATGCTCACATGACCACATCACCAATAATGACAGCCGTTGTCACCTCTTTTGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAgg < 8:49601/149‑1 (MQ=255) aaCCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAgg < 3:44485/149‑1 (MQ=255) gCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGAGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGcc > 2:173196/1‑147 (MQ=255) caTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt < 8:249218/109‑1 (MQ=255) caTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGt > 7:249218/1‑109 (MQ=255) gCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACTGCAAGGGCCAGGCGCCGCACGCccagggccagg < 1:173196/148‑1 (MQ=255) tCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGcgcc > 6:54712/1‑118 (MQ=255) tCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGcgcc < 5:54712/118‑1 (MQ=255) gACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCcac > 3:37421/1‑148 (MQ=255) aCAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACaa < 1:143357/149‑1 (MQ=255) ccGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTACGGTGCTCGCCGACACGGGTAATGGCAAATGCCAGGGCAAAGGTCAGGGGAACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCTGCCACAAg > 7:143920/1‑146 (MQ=255) ttGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAgc < 5:125457/149‑1 (MQ=255) ccTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggc > 5:289415/1‑149 (MQ=255) cTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggcg > 6:71549/1‑149 (MQ=255) aTTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAA‑GCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCaa < 4:13667/149‑1 (MQ=255) ttGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCaa < 7:121293/149‑1 (MQ=255) gCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGa > 3:146662/1‑149 (MQ=255) ggTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACt < 5:71549/149‑1 (MQ=255) gccttggcctCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCa > 1:318513/1‑149 (MQ=255) cttggccctggcctttgccattacccgggtcggcgagcaccggaccagaggccaaggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCAcg > 6:203671‑M2/58‑149 (MQ=255) CTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCAcg < 4:296793‑M1/149‑1 (MQ=255) ttggccctggcctttgccattacccgggtcggcgagcaccggaccagaggccaaggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCAcgg > 2:322314‑M2/57‑149 (MQ=255) TTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCAcgg < 4:101867‑M1/149‑1 (MQ=255) GGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCAcggc > 4:146662‑M1/1‑148 (MQ=255) CCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACTGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGAACAGCGCCGGCGGCAATGACTGGCACgccggc < 2:299427‑M1/149‑1 (MQ=255) gcctttgccattacccgggtcggcgagcaccggaccagaggccaaggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGt < 5:203671‑M2/101‑1 (MQ=255) gTCCGGTGCTCGCCGACCCGGGTTATGGCAAAGGCCAGGTCCAATGTCAGGGGCACGGCAATGGCCATGGGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGTCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCg < 1:299427/146‑1 (MQ=255) tCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGt > 4:61347/1‑149 (MQ=255) gCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTgg > 3:299096/1‑149 (MQ=255) gCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTgg > 5:64480/1‑149 (MQ=255) ccGACCCTGGTAATGGGTAAGGCGAGGGCCATGTTCAGGGGCACGGCAAGGTCCAGGCGGCGCACGCGCAGGGCCAGGGCAATTCGGGCGGCCACAATCAGAGCGCCGGCGGCAATGTCTGGCACGGCGGCCCGTCCTTCTACCGTGGc < 4:140282/149‑1 (MQ=255) ccGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGc > 2:303159/1‑149 (MQ=255) aCCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGAt < 4:37421/149‑1 (MQ=255) aCCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGAt < 4:299096/149‑1 (MQ=255) cGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTa < 3:296793/149‑1 (MQ=255) tGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCa > 8:45171/1‑149 (MQ=255) ggCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCAt > 6:89678/1‑149 (MQ=255) gCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGggcgg > 2:211534/1‑76 (MQ=255) gCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGggcgg < 1:211534/76‑1 (MQ=255) gCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAAATCGGGCGGCCACAAGCAGAGCGCCGGCGGTAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATc > 6:313499/1‑149 (MQ=255) gCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCg > 6:108804/1‑147 (MQ=255) gCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCg < 5:108804/147‑1 (MQ=255) gCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGt > 5:61472/1‑149 (MQ=255) aGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCAAGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGc > 1:253488/1‑149 (MQ=255) aggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTgg > 7:156027‑M2/4‑91 (MQ=255) aggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTgg < 8:156027‑M2/88‑1 (MQ=255) aggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCACGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCg > 5:60762‑M2/4‑147 (MQ=255) ggTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACCAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAg > 8:206441‑M2/3‑149 (MQ=255) | GTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAG > NC_002947/2873180‑2873474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |