New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3042377	41 (0.810)	4 (0.080)	4/250	NT	8.1%	coding (280/315 nt)	PP_5537	membrane protein
	?	NC_002947	= 3042402	51 (1.050)					coding (305/315 nt)	PP_5537	membrane protein

CATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCC  >  NC_002947/3042235‑3042524                                                                                                                                               |                                                                                                                                                    cATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGAc                                                                                                                                                 >  6:160360/1‑147 (MQ=255)                 aTGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAggg                                                                                                                               <  7:96993/149‑1 (MQ=255)                      cGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGc                                                                                                                           <  6:7858‑M2/148‑2 (MQ=255)                      cGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACAGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGCCCAGCGGCGTTGACGAGGGGCGc                                                                                                                           <  6:187591‑M2/148‑2 (MQ=255)                            ggCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCAt                                                                                                                    <  3:70918/149‑1 (MQ=255)                               cGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAg                                                                                                                 >  4:124307/1‑149 (MQ=255)                                     cTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGc                                                                                                           >  1:226401/1‑149 (MQ=255)                                           ggTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGcgcccctcggcaacgcctctggtcaccagg                                                                                                                       <  4:247725‑M1/131‑31 (MQ=255)                                           ggTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGcgcccctcggcaacgcctctggtcaccagg                                                                                                                       >  3:247725‑M1/1‑101 (MQ=255)                                           ggTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTg                                                                                                       >  3:14589/1‑147 (MQ=255)                                             tGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAgg                                                                                                   >  5:78321/1‑149 (MQ=255)                                                  gaCAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGcgcccctcggcaacgcctctggtcacca                                                                                                                         >  5:267000‑M1/1‑94 (MQ=255)                                                  gaCAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGcgcccctcggcaacgcctctggtcacca                                                                                                                         <  6:267000‑M1/122‑29 (MQ=255)                                                  gaCAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTAt                                                                                              <  1:278328/149‑1 (MQ=255)                                                        cGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCtg                                                                                        >  4:60214/1‑149 (MQ=255)                                                         gCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCtgt                                                                                       <  4:232366/149‑1 (MQ=255)                                                           aTGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCtgtgt                                                                                     <  5:57529/149‑1 (MQ=255)                                                                    agagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTgtggtggtg                                                                            <  8:277383/149‑1 (MQ=255)                                                                    agagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTgtggtggtg                                                                            >  7:277383/1‑149 (MQ=255)                                                                     gagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGc                                                                           >  3:227373/1‑149 (MQ=255)                                                                        ccGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGt                                                                        >  2:211137/1‑149 (MQ=255)                                                                          gggATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTc                                                                      >  8:59855/1‑149 (MQ=255)                                                                            gATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCt                                                                    <  2:226401/149‑1 (MQ=255)                                                                                gcgGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCaa                                                                 <  3:124307/148‑1 (MQ=255)                                                                                  ggTGCTGCCTTACCTGCTGCTGGCCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGAc                                                              >  8:249836/1‑149 (MQ=255)                                                                                           ttACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGt                                                     >  6:313114/1‑149 (MQ=255)                                                                                              ccTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGttt                                                   <  3:60214/148‑1 (MQ=255)                                                                                               ctgctgctgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTcc                                                 >  2:172433/1‑149 (MQ=255)                                                                                                      tgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCtgtgtgt                                                                                   <  4:194264/108‑1 (MQ=255)                                                                                                      tgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCtgtgtgt                                                                                   >  3:194264/1‑108 (MQ=255)                                                                                                        aCCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCa                                         <  5:7858/148‑1 (MQ=255)                                                                                                          cgtcgtGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAggg                                      >  7:283488/1‑149 (MQ=255)                                                                                                                gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTgtggtg                                                                               >  2:306876/1‑102 (MQ=255)                                                                                                                gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTgtggtg                                                                               <  1:306876/102‑1 (MQ=255)                                                                                                                gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCa                                                                  >  2:143079/1‑115 (MQ=255)                                                                                                                gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCa                                                                  <  1:143079/115‑1 (MQ=255)                                                                                                                 ttCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCAc                               <  5:313114/149‑1 (MQ=255)                                                                                                                   cGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCAcc                              <  7:59855/148‑1 (MQ=255)                                                                                                                     tttCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGtt                           >  4:160491/1‑149 (MQ=255)                                                                                                                         gCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTgcg                       <  8:283488/149‑1 (MQ=255)                                                                                                                         gCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTACCTGGTTTCCTGCTATCAGGGCTATCACCGTTTgc                        <  1:211137/148‑1 (MQ=255)                                                                                                                           tGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCt                     >  2:142149/1‑149 (MQ=255)                                                                                                                             gggCGGTTGCTGTACCTGGTGTCCAGAGGCGTTGCCGAGGGGCGCCAGCCATGTGCAGTGCCTTGCAGGGCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTtc                   <  5:174571/149‑1 (MQ=255)                                                                                                                             gggCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTtc                   >  8:246920/1‑149 (MQ=255)                                                                                                                               gCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCt                                                        <  4:266762/110‑1 (MQ=255)                                                                                                                               gCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCt                                                        >  3:266762/1‑110 (MQ=255)                                                                                                                                       tGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGt                            >  7:63794/1‑130 (MQ=255)                                                                                                                                       tGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGt                            <  8:63794/130‑1 (MQ=255)                                                                                                                                           ccTGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcacc                       <  4:247725‑M2/131‑102 (MQ=255)                                                                                                                                           ccTGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcacc                       >  3:247725‑M2/1‑30 (MQ=255)                                                                                                                                             tGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtc                              <  6:267000‑M2/122‑95 (MQ=255)                                                                                                                                             tGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtc                              >  5:267000‑M2/1‑28 (MQ=255)                                                                                                                                               gcgcccctcgtcaacgccgctgggcaccaggtacagcaacggccccagcgaaacgaacacgactgtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcaccatccagcaaccggccagcccg  <  6:187591‑M1/148‑148 (MQ=255)                                                                                                                                               gcgcccctcggcaacgcctctggtcaccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcaccatccagcaaccggccagcccg  <  6:7858‑M1/148‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    CATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCTGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCC  >  NC_002947/3042235‑3042524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.