New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3042377	41 (0.810)	4 (0.080)	4/250	NT	8.1%	coding (280/315 nt)	PP_5537	membrane protein
	?	NC_002947	= 3042402	51 (1.050)					coding (305/315 nt)	PP_5537	membrane protein

CGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTGCCGTGTTC  >  NC_002947/3042256‑3042543                                                                                                                                                   |                                                                                                                                               cGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGc                                                                                                                                               <  6:7858‑M2/148‑2 (MQ=255) cGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACAGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGCCCAGCGGCGTTGACGAGGGGCGc                                                                                                                                               <  6:187591‑M2/148‑2 (MQ=255)       ggCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCAt                                                                                                                                        <  3:70918/149‑1 (MQ=255)          cGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAg                                                                                                                                     >  4:124307/1‑149 (MQ=255)                cTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGc                                                                                                                               >  1:226401/1‑149 (MQ=255)                      ggTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTg                                                                                                                           >  3:14589/1‑147 (MQ=255)                        tGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAgg                                                                                                                       >  5:78321/1‑149 (MQ=255)                             gaCAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTAt                                                                                                                  <  1:278328/149‑1 (MQ=255)                                   cGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑tg                                                                                                           >  4:60214/1‑149 (MQ=255)                                    gCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑tgt                                                                                                          <  4:232366/149‑1 (MQ=255)                                      aTGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑tgtgt                                                                                                        <  5:57529/149‑1 (MQ=255)                                               agagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTgtggtggtg                                                                                               <  8:277383/149‑1 (MQ=255)                                               agagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTgtggtggtg                                                                                               >  7:277383/1‑149 (MQ=255)                                                gagCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGc                                                                                              >  3:227373/1‑149 (MQ=255)                                                   ccGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGt                                                                                           >  2:211137/1‑149 (MQ=255)                                                     gggATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTc                                                                                         >  8:59855/1‑149 (MQ=255)                                                       gATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCt                                                                                       <  2:226401/149‑1 (MQ=255)                                                           gcgGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCaa                                                                                    <  3:124307/148‑1 (MQ=255)                                                             ggTGCTGCCTTACCTGCTGCTGGCCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGAc                                                                                 >  8:249836/1‑149 (MQ=255)                                                                      ttACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGt                                                                        >  6:313114/1‑149 (MQ=255)                                                                         ccTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGttt                                                                      <  3:60214/148‑1 (MQ=255)                                                                          ctgctgctgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTcc                                                                    >  2:172433/1‑149 (MQ=255)                                                                                 tgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑tgtgtgt                                                                                                      >  3:194264/1‑108 (MQ=255)                                                                                 tgACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑tgtgtgt                                                                                                      <  4:194264/108‑1 (MQ=255)                                                                                   aCCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCa                                                            <  5:7858/148‑1 (MQ=255)                                                                                     cgtcgtGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAggg                                                         >  7:283488/1‑149 (MQ=255)                                                                                           gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTgtggtg                                                                                                  <  1:306876/102‑1 (MQ=255)                                                                                           gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTgtggtg                                                                                                  >  2:306876/1‑102 (MQ=255)                                                                                           gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCa                                                                                     <  1:143079/115‑1 (MQ=255)                                                                                           gtTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCa                                                                                     >  2:143079/1‑115 (MQ=255)                                                                                            ttCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCAc                                                  <  5:313114/149‑1 (MQ=255)                                                                                              cGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCAcc                                                 <  7:59855/148‑1 (MQ=255)                                                                                                tttCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGtt                                              >  4:160491/1‑149 (MQ=255)                                                                                                    gCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTgcg                                          <  8:283488/149‑1 (MQ=255)                                                                                                    gCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTACCTGGTTTCCTGCTATCAGGGCTATCACCGTTTgc                                           <  1:211137/148‑1 (MQ=255)                                                                                                      tGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCt                                        >  2:142149/1‑149 (MQ=255)                                                                                                        gggCGGTTGCTGTACCTGGTGTCCAGAGGCGTTGCCGAGGGGCGCCAGCCATGTGCAGTGCCTTGCAGGGCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTtc                                      <  5:174571/149‑1 (MQ=255)                                                                                                        gggCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTtc                                      >  8:246920/1‑149 (MQ=255)                                                                                                          gCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCt                                                                           <  4:266762/110‑1 (MQ=255)                                                                                                          gCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCt                                                                           >  3:266762/1‑110 (MQ=255)                                                                                                                  tGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGt                                               <  8:63794/130‑1 (MQ=255)                                                                                                                  tGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGt                                               >  7:63794/1‑130 (MQ=255)                                                                                                                      ccTGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcacc                                           <  4:247725‑M2/131‑102 (MQ=255)                                                                                                                      ccTGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtctcgcacc                                           >  3:247725‑M2/1‑30 (MQ=255)                                                                                                                        tGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtc                                                  >  5:267000‑M2/1‑28 (MQ=255)                                                                                                                        tGGTGACCAGAGGCGTTGCCGAGGGGCGccaggtacagcaacggccccagcgaaacgaacacgacggtcagcagcaggtaaggcagcaccgcgatcccggctctgccgcgcatgcggttgtc                                                  <  6:267000‑M2/122‑95 (MQ=255)                                                                                                                            gACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCg                    >  8:189913/1‑147 (MQ=255)                                                                                                                            gACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCg                    >  7:251864/1‑147 (MQ=255)                                                                                                                             aCCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCggag                 <  1:172433/149‑1 (MQ=255)                                                                                                                             aCCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCgga                  <  5:160360/148‑1 (MQ=255)                                                                                                                               cAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCggagga               >  7:205532/1‑149 (MQ=255)                                                                                                                                    gCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGCGTTTGTGTGGTGGTGCTGTTCCTCAAGACGTACCTGGTTACCTGCTAACAGGGCTATAACCGTTTGCGATTCGTGGCTTTACCCAACCCGCAGGACGCt           >  1:242246/1‑149 (MQ=255)                                                                                                                                    gCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTg          <  7:246920/149‑1 (MQ=255)                                                                                                                                          ccGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCt                                                                   >  2:209514/1‑86 (MQ=255)                                                                                                                                          ccGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCt                                                                   <  1:209514/86‑1 (MQ=255)                                                                                                                                           cGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTGCCgtgt    >  8:89174/1‑148 (MQ=255)                                                                                                                                            gAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTGCCGTGTTc  <  7:189913/149‑1 (MQ=255)                                                                                                                                            gAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTGCCGTGTTc  <  8:251864/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               CGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCTGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGTGACCAGAGGCGTTGCCGAGGGGCGCCAGCCATGAGCAGTGCCTTGCAGGCCTATGCGC‑TGTGTGTGGTGGTGCTGTTCCTCAAGACGTTCCTGGTTTCCTGCTATCAGGGCTATCACCGTTTGCGCTTCGTCGCGTTCACCAACCCGGAGGACGCTGCCGTGTTC  >  NC_002947/3042256‑3042543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.