New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3117011 =	48 (0.950)	4 (0.090)	4/240	NT	8.2%	coding (384/489 nt)	PP_2733	membrane protein
	?	NC_002947	3117102 =	45 (0.960)					coding (293/489 nt)	PP_2733	membrane protein

GCAGGTGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAG  >  NC_002947/3116872‑3117148                                                                                                                                             |                                                                                                                                          aaggcgctgttgcgcgtcacctttgtcggctgcgtgctcgacagcgtgctgggagcgctgggggtgttcggtttcgacgcctggcccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTgg                                                                                                                                    >  1:112900‑M1/141‑148 (MQ=255)   aGGTGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGcgcc                                                                                                                                >  8:109424/1‑149 (MQ=255)      tGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCgccgcc                                                                                                                             >  8:92760/1‑149 (MQ=255)      tGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCgccgcc                                                                                                                             <  6:115546/149‑1 (MQ=255)      tGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCgccgcc                                                                                                                             >  7:245103/1‑149 (MQ=255)         gTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTa                                                                                                                           >  2:214411/1‑148 (MQ=255)             cgcgtcacctttgtcggctgcgtgctcgacagcgtgctgggagcgctgggggtgttcggtttcgacgcctggcccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTGGCGCCGCCTACa                                                                                                                         <  4:248912‑M1/19‑1 (MQ=255)                cTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGc                                                                                                                    >  4:255975/1‑148 (MQ=255)                cTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGc                                                                                                                    <  7:45526/148‑1 (MQ=255)                   cGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCa                                                                                                                  >  5:239664/1‑147 (MQ=255)                       cGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGgc                                                                                                            <  7:109424/149‑1 (MQ=255)                          tGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGgccgc                                                                                                         <  6:143929/149‑1 (MQ=255)                              gCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAAt                                                                                                     >  7:263189/1‑149 (MQ=255)                              gCCGGTCAGCGCCGCGCCGCGAGGCGAGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTCGCAGGCCGGTTTC‑CCGCGCGCCCAATGGCAAGGCAACACCTGCAAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAAt                                                                                                     >  7:287722/1‑149 (MQ=255)                                  gTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAAGCGcc                                                                                                 >  5:6727/1‑149 (MQ=255)                                     aGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGccccc                                                                                              >  6:179758/1‑149 (MQ=255)                                       cgccgcgccgCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCcag                                                                                            >  7:5376/1‑149 (MQ=255)                                         gcgcgcctcgCGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCcag                                                                                            >  6:311672/2‑147 (MQ=255)                                         ccgcgccgcgAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGCTATC‑CCGCGCGCCCAAAGGCAAGGCAACACCTGCCAGCCAGGCACCGCCAACATAGCCCAGAGCGACGCCAATCGcacaacgc                                                                                           >  7:266796/1‑141 (MQ=255)                                          cgcgacgcgaGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCcagcag                                                                                         <  8:272445/149‑1 (MQ=255)                                           gcgccgcgAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGt                                                                                        <  8:263189/149‑1 (MQ=255)                                             gccgcgAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTgc                                                                                      <  7:92760/149‑1 (MQ=255)                                                   cctcgcggCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCagag                                                                                                               >  3:292120/4‑118 (MQ=255)                                                   cctcgcggCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCagag                                                                                                               <  4:292120/115‑1 (MQ=255)                                                       gcgcCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGc                                                                            <  8:245103/149‑1 (MQ=255)                                                                ggggcagggCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGtgcctg                                                                   >  1:92178/1‑149 (MQ=255)                                                                     agggCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGc                                                              <  7:217/149‑1 (MQ=255)                                                                        gCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGtgcct                                                                    <  7:60162/140‑1 (MQ=255)                                                                        gCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGtgcct                                                                    >  8:60162/1‑140 (MQ=255)                                                                            gacgcctggcccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGc                                                        <  1:137181‑M1/84‑1 (MQ=255)                                                                                ccATAACGGCATCAGTAGCAGGCCGGTTTCGCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAACCGCCCCCAGCAGTGCGCCGATTCGCCAGtgc                                                                      >  1:191391/1‑131 (MQ=255)                                                                                  aTAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGcc                                                       >  1:45799/1‑143 (MQ=255)                                                                                  aTAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGcc                                                       <  2:45799/143‑1 (MQ=255)                                                                                    gcccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCt                                                  >  2:137181‑M1/58‑147 (MQ=255)                                                                                     aCGGCATCCTTAGCAGGCCGGTTTC‑CCGCGCGCCCAATGGCCATGCAACCCCTGCCATCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGa                                              <  3:255975/149‑1 (MQ=255)                                                                                      ccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGa                                              >  3:248912‑M1/56‑149 (MQ=255)                                                                                              gTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCGTACATAGGCCAGAGGGCCGCCATTCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCCGGCTGTGACGCATCCCg                                     >  5:28065/1‑149 (MQ=255)                                                                                                     gCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCa                              <  6:239664/149‑1 (MQ=255)                                                                                                       cGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                             >  3:307694/1‑148 (MQ=255)                                                                                                       cGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGc                            <  5:311672/149‑1 (MQ=255)                                                                                                             c‑cAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCAAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTCCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCaccaa                       <  1:75536/148‑1 (MQ=255)                                                                                                                 gcgcgcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACcac                   <  6:267051/149‑1 (MQ=255)                                                                                                                  cgcgcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGCCGCATCCCGCTGGCCAGCaccaacccaa                  >  3:28075/1‑146 (MQ=255)                                                                                                                     gcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCAcagca               <  2:92178/149‑1 (MQ=255)                                                                                                                       ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             >  3:250259/1‑149 (MQ=255)                                                                                                                       ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             >  2:56002/1‑149 (MQ=255)                                                                                                                       ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             >  2:320501/1‑149 (MQ=255)                                                                                                                       ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             >  1:321945/1‑149 (MQ=255)                                                                                                                         aaTGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             <  2:238116/147‑1 (MQ=255)                                                                                                                         aaTGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc             >  1:238116/1‑147 (MQ=255)                                                                                                                                  gcaaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAg  <  5:179758/149‑1 (MQ=255)                                                                                                                                    aaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                             >  5:324617/1‑120 (MQ=255)                                                                                                                                    aaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                             <  6:324617/120‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          GCAGGTGCGTTACTGCTCCGAGCGATGTCGCCGGTCAGCGCCGCGCCGCGAGGCGCGCCAGCAGGGGCAGGGCCAAAGCCCATAACGGCATCAGTAGCAGGCCGGTTTC‑CAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAG  >  NC_002947/3116872‑3117148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.