New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3117011 =	48 (0.950)	4 (0.090)	4/240	NT	8.2%	coding (384/489 nt)	PP_2733	membrane protein
	?	NC_002947	3117102 =	45 (0.960)					coding (293/489 nt)	PP_2733	membrane protein

ACGGCATCAGTAGCAGGCCGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAGCGCCTT  >  NC_002947/3116956‑3117241                                                                                                                                                   |                                                                                                                                            ccctgccgctgtggctagcgctgctgtggttggtgctggccagcgggatgcgtcaCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGa                                                                                                                                           >  3:248912‑M1/56‑149 (MQ=255) aCGGCATCCTTAGCAGGCCGGTTTCCCGCGCGCCCAATGGCCATGCAACCCCTGCCATCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGa                                                                                                                                           <  3:255975/149‑1 (MQ=255)          gTAGCAGGCCGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCGTACATAGGCCAGAGGGCCGCCATTCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCCGGCTGTGACGCATCCCg                                                                                                                                  >  5:28065/1‑149 (MQ=255)                 gCCGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCa                                                                                                                           <  6:239664/149‑1 (MQ=255)                   cGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                                                                                                                          >  3:307694/1‑148 (MQ=255)                   cGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGc                                                                                                                         <  5:311672/149‑1 (MQ=255)                         ccAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCAAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTCCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCaccaa                                                                                                                    <  1:75536/148‑1 (MQ=255)                            gcgcgcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACcac                                                                                                                <  6:267051/149‑1 (MQ=255)                             cgcgcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGCCGCATCCCGCTGGCCAGCaccaacccaa                                                                                                               >  3:28075/1‑146 (MQ=255)                                gcCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCAcagca                                                                                                            <  2:92178/149‑1 (MQ=255)                                  ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          >  1:321945/1‑149 (MQ=255)                                  ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          >  3:250259/1‑149 (MQ=255)                                  ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          >  2:320501/1‑149 (MQ=255)                                  ccAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          >  2:56002/1‑149 (MQ=255)                                    aaTGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          >  1:238116/1‑147 (MQ=255)                                    aaTGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACagcagc                                                                                                          <  2:238116/147‑1 (MQ=255)                                             gcaaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAg                                                                                               <  5:179758/149‑1 (MQ=255)                                               aaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                                                                                                                          >  5:324617/1‑120 (MQ=255)                                               aaCACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAg                                                                                                                          <  6:324617/120‑1 (MQ=255)                                                     tcacagcctggcatgggccggcaggcactggcgaatcggcgcactgctgggggcgattggcggccctctggcctatgtaggcggcgccaggctgTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAggg                                                                                       >  3:248912‑M2/95‑149 (MQ=255)                                                         agcctggcatgggccggcaggcactggcgaatcggcgcactgctgggggcgattggcggccctctggcctatgtaggcggcgccaggctgTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGc                                                                                     >  2:137181‑M2/91‑147 (MQ=255)                                                          GCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAg                                                                                  <  7:41673‑M1/149‑1 (MQ=255)                                                           CCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCCGCAGGGGCCAgg                                                                                 <  8:205630‑M1/149‑1 (MQ=255)                                                            CTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCa                                                                                                                        <  5:72857‑M1/109‑1 (MQ=255)                                                            CTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCa                                                                                                                        >  6:72857‑M1/1‑109 (MQ=255)                                                               gcatgggccggcaggcactggcgaatcggcgcactgctgggggcgattggcggccctctggcctatgtaggcggcgccaggctgTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTc                                                                             <  1:137181‑M2/65‑1 (MQ=255)                                                                 gccgccTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGGCGa                                                                           <  7:205630/149‑1 (MQ=255)                                                                     ccTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAAcc                                                                       <  8:5376/149‑1 (MQ=255)                                                                      cTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCg                                                                      <  1:56002/149‑1 (MQ=255)                                                                      cTACATAGGCCAGACGGCCGCCACTCGCCCCCAGCAGTGCGCCGATTCCCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCCCAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCg                                                                      <  6:6727/149‑1 (MQ=255)                                                                       tACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCaccaac                                                                                                                   >  3:51857/1‑103 (MQ=255)                                                                       tACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCaccaac                                                                                                                   <  4:51857/103‑1 (MQ=255)                                                                              gCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAggg                                                                                       >  6:200521/1‑124 (MQ=255)                                                                              gCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAggg                                                                                       <  5:200521/124‑1 (MQ=255)                                                                                 agagGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAg                                                           >  2:267889/1‑149 (MQ=255)                                                                                     ggCCACCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCt                                                       >  3:207589/1‑149 (MQ=255)                                                                                      gccgccAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTc                                                      <  1:267889/149‑1 (MQ=255)                                                                                       ccgccAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTcc                                                     >  5:87165/1‑149 (MQ=255)                                                                                       ccaccAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTcc                                                     <  4:207589/146‑1 (MQ=255)                                                                                        cgccAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGc                                                                                                                         >  5:199225/1‑80 (MQ=255)                                                                                        cgccAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGc                                                                                                                         <  6:199225/80‑1 (MQ=255)                                                                                           cAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGc                                                 <  4:250259/149‑1 (MQ=255)                                                                                                    ccAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTc                                         >  5:316756/1‑148 (MQ=255)                                                                                                    ccAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTc                                         >  1:52073/1‑148 (MQ=255)                                                                                                     cagcagTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGa                                       <  8:41673/149‑1 (MQ=255)                                                                                                      agcagTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAg                                      <  1:214411/149‑1 (MQ=255)                                                                                                      agcagTGCGCCGAGTCGCCAGTGCCTGCCGTCCCATGCCAGGCTGTGACGCCTCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAg                                      <  8:287722/149‑1 (MQ=255)                                                                                                           tGCGCAGATTCGCCAGAGCCTGCCGGCCAATGCGAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCTCAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGc                                 <  6:28065/149‑1 (MQ=255)                                                                                                                 gATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGa                           >  1:1313/1‑149 (MQ=255)                                                                                                                       ccAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAgg                     >  4:179348/1‑149 (MQ=255)                                                                                                                              ctgccGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGAcgcg              >  1:270098/1‑149 (MQ=255)                                                                                                                              ctgccGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGAcgcg              >  5:137601/1‑149 (MQ=255)                                                                                                                               tgccGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGAcgcg              >  1:83190/1‑148 (MQ=255)                                                                                                                                tgtaggcggcgccaggctgTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGAcgcg              <  4:248912‑M2/128‑1 (MQ=255)                                                                                                                                    gCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAg        <  2:52073/149‑1 (MQ=255)                                                                                                                                      ccATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAgcg      >  3:101953/1‑149 (MQ=255)                                                                                                                                      ccATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAgcg      >  6:310494/1‑149 (MQ=255)                                                                                                                                           ccaggctgTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAGCGCCtt  >  1:112900‑M2/9‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                            ACGGCATCAGTAGCAGGCCGGTTTCCAGCGCGCCCAATGGCAAGGCAACACCTGCCAGCCTGGCGCCGCCTACATAGGCCAGAGGGCCGCCAATCGCCCCCAGCAGTGCGCCGATTCGCCAGTGCCTGCCGGCCCATGCCAGGCTGTGACGCATCCCGCTGGCCAGCACCAACCACAGCAGCGCTAGCCACAGCGGCAGGGGCCAGGCGTCGAAACCGAACACCCCCAGCGCTCCCAGCACGCTGTCGAGCACGCAGCCGACAAAGGTGACGCGCAACAGCGCCTT  >  NC_002947/3116956‑3117241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.