New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3562109	39 (0.770)	3 (0.060)	3/248	NT	7.5%	coding (423/822 nt)	PP_3145	hypothetical protein
	?	NC_002947	= 3562140	36 (0.740)					coding (392/822 nt)	PP_3145	hypothetical protein

GATCACCTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCT  >  NC_002947/3561965‑3562255                                                                                                                                                  |                                                                                                                                                   gATCACCTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGttat                                                                                                                                                >  5:1028‑M1/1‑145 (MQ=255)  aTCACCTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGAt                                                                                                                                               <  4:93573/149‑1 (MQ=255)     aCCTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑CCCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTc                                                                                                                                            >  2:318708/1‑149 (MQ=255)      ccTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGt                                                                                                                                                  <  4:271667/142‑1 (MQ=255)      ccTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGt                                                                                                                                                  >  3:271667/1‑142 (MQ=255)       cTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCt                                                                                                                                          >  1:216897/1‑149 (MQ=255)       cTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCt                                                                                                                                          <  7:11254/149‑1 (MQ=255)           tAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGCGACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTg                                                                                                                                         >  1:241985/1‑147 (MQ=255)            aaGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGc                                                                                                                                     >  6:285762/1‑149 (MQ=255)             aGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCGCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGc                                                                                                                                     <  5:285762/148‑1 (MQ=255)                      gCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCtgctgc                                                                                                                            >  7:28615/1‑148 (MQ=255)                            gTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATa                                                                                                                      <  8:5055/148‑1 (MQ=255)                               aCTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAAccg                                                                                                                  <  5:247132‑M2/149‑4 (MQ=255)                                 tggtggACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGAGAAccgcg                                                                                                                <  8:80284‑M2/149‑6 (MQ=255)                                   gtggACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGt                                                                                                              <  3:287060/149‑1 (MQ=255)                                    tggACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGtt                                                                                                             <  2:241985/149‑1 (MQ=255)                                      gACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTgg                                                                                                           <  3:153293/149‑1 (MQ=255)                                       acacTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGttatctcgcagcagacgctgcaggaaatcacccgctacttca                                                                                                          <  6:1028‑M1/149‑43 (MQ=255)                                           tGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGttatctcgcagcagacgctgcaggaaatcac                                                                                                                     <  2:92087‑M1/134‑32 (MQ=255)                                           tGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGttatctcgcagcagacgctgcaggaaatcac                                                                                                                     >  1:92087‑M1/1‑103 (MQ=255)                                             ccGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCgg                                                                                                     <  1:309204/148‑1 (MQ=255)                                                tGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                 >  2:228375/1‑149 (MQ=255)                                                     gCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTa                                                                                            <  8:28615/149‑1 (MQ=255)                                                      ccGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTgggg                                                                                              >  7:183866/1‑146 (MQ=255)                                                      ccGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTgggg                                                                                              >  7:43944/1‑146 (MQ=255)                                                        gggCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGaa                                                                                         >  6:253517/1‑149 (MQ=255)                                                         ggCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAAc                                                                                        <  2:216897/149‑1 (MQ=255)                                                            gc‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                 >  8:101645/1‑137 (MQ=255)                                                            gc‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                 <  7:101645/137‑1 (MQ=255)                                                                            ccGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGaa                                                                       >  5:6853/1‑148 (MQ=255)                                                                            ccGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAac                                                                      <  8:131758/149‑1 (MQ=255)                                                                              gggCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                    <  8:183866/149‑1 (MQ=255)                                                                                  cAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTg                                                                <  1:228375/149‑1 (MQ=255)                                                                                       cccTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTa                                                           >  8:193783/1‑149 (MQ=255)                                                                                        ccTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTAc                                                          <  6:247132/149‑1 (MQ=255)                                                                                              ccAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTg                                                    <  8:43944/149‑1 (MQ=255)                                                                                                 aCGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGata                                                 <  6:6853/149‑1 (MQ=255)                                                                                                 aCGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGata                                                 <  1:318708/149‑1 (MQ=255)                                                                                                     cATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                             >  7:196228/1‑149 (MQ=255)                                                                                                        cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTTATATTGa                                             >  2:217183/1‑146 (MQ=255)                                                                                                        cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                             <  1:217183/146‑1 (MQ=255)                                                                                                        cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                             <  1:212564/146‑1 (MQ=255)                                                                                                        cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                             >  2:212564/1‑146 (MQ=255)                                                                                                          cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                    <  8:95514/121‑1 (MQ=255)                                                                                                          cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                    >  7:95514/1‑121 (MQ=255)                                                                                                          cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTg                                        <  8:196228/149‑1 (MQ=255)                                                                                                                ccATTTCGCGGCGCAGGGCCTCCTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAAAACCATGCTGTACTGGTTGATATTGACCTTGAGGTc                                   >  5:85222/1‑148 (MQ=255)                                                                                                                               gggCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCAcc                   <  5:253517/149‑1 (MQ=255)                                                                                                                                        tGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAAccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggcagtgt          <  6:1028‑M2/149‑108 (MQ=255)                                                                                                                                              cgcGGttctctcgcagcagacgctgcaggaaatcacccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggcagtgtccacca    <  8:80284‑M1/148‑145 (MQ=255)                                                                                                                                               gCGGGTGATTTCCTTCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTggg                                      <  8:111889/114‑1 (MQ=255)                                                                                                                                               gCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTggg                                      >  7:111889/1‑114 (MQ=255)                                                                                                                                                cGGttatctcgcagcagacgctgcaggaaatcacccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggcagtgtccaccagt  <  5:247132‑M1/149‑147 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GATCACCTCGTAAGGCCTGAGGCCCTCGTTACTGGTGGACACTGCCGTGATCGCCGGGCGC‑ACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCT  >  NC_002947/3561965‑3562255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.