New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3562109	39 (0.770)	3 (0.060)	3/248	NT	7.5%	coding (423/822 nt)	PP_3145	hypothetical protein
	?	NC_002947	= 3562140	36 (0.740)					coding (392/822 nt)	PP_3145	hypothetical protein

ACTGGTGGACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTGCAGCCGGCTGTAGTCTTT  >  NC_002947/3561995‑3562285                                                                                                                                                  |                                                                                                                                                  aCTGGTGGACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAAccg                                                                                                                                                <  5:247132‑M2/149‑4 (MQ=255)   tggtggACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGAGAAccgcg                                                                                                                                              <  8:80284‑M2/149‑6 (MQ=255)     gtggACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGt                                                                                                                                            <  3:287060/149‑1 (MQ=255)      tggACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGtt                                                                                                                                           <  2:241985/149‑1 (MQ=255)        gACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTgg                                                                                                                                         <  3:153293/149‑1 (MQ=255)               ccGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCgg                                                                                                                                   <  1:309204/148‑1 (MQ=255)                  tGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                                               >  2:228375/1‑149 (MQ=255)                       gCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTa                                                                                                                          <  8:28615/149‑1 (MQ=255)                        ccGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTgggg                                                                                                                            >  7:183866/1‑146 (MQ=255)                        ccGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTgggg                                                                                                                            >  7:43944/1‑146 (MQ=255)                          gggCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGaa                                                                                                                       >  6:253517/1‑149 (MQ=255)                           ggCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAAc                                                                                                                      <  2:216897/149‑1 (MQ=255)                              gcACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                                               <  7:101645/137‑1 (MQ=255)                              gcACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTg                                                                                                                               >  8:101645/1‑137 (MQ=255)                                             ccGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGaa                                                                                                     >  5:6853/1‑148 (MQ=255)                                             ccGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAac                                                                                                    <  8:131758/149‑1 (MQ=255)                                               gggCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                                                  <  8:183866/149‑1 (MQ=255)                                                   cAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTg                                                                                              <  1:228375/149‑1 (MQ=255)                                                        cccTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTa                                                                                         >  8:193783/1‑149 (MQ=255)                                                         ccTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTAc                                                                                        <  6:247132/149‑1 (MQ=255)                                                               ccAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTg                                                                                  <  8:43944/149‑1 (MQ=255)                                                                  aCGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGata                                                                               <  1:318708/149‑1 (MQ=255)                                                                  aCGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGata                                                                               <  6:6853/149‑1 (MQ=255)                                                                      cATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                                                           >  7:196228/1‑149 (MQ=255)                                                                         cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTTATATTGa                                                                           >  2:217183/1‑146 (MQ=255)                                                                         cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                                                           <  1:212564/146‑1 (MQ=255)                                                                         cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                                                           >  2:212564/1‑146 (MQ=255)                                                                         cACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGa                                                                           <  1:217183/146‑1 (MQ=255)                                                                           cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                                                  >  7:95514/1‑121 (MQ=255)                                                                           cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAacac                                                                                                  <  8:95514/121‑1 (MQ=255)                                                                           cGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTg                                                                      <  8:196228/149‑1 (MQ=255)                                                                                 ccATTTCGCGGCGCAGGGCCTCCTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAAAACCATGCTGTACTGGTTGATATTGACCTTGAGGTc                                                                 >  5:85222/1‑148 (MQ=255)                                                                                                gggCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCAcc                                                 <  5:253517/149‑1 (MQ=255)                                                                                                         tGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAAccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggcagtgt                                        <  6:1028‑M2/149‑108 (MQ=255)                                                                                                                gCGGGTGATTTCCTTCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTggg                                                                    <  8:111889/114‑1 (MQ=255)                                                                                                                gCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTggg                                                                    >  7:111889/1‑114 (MQ=255)                                                                                                                    gTGATTTCCTGCAGCGTCTGCTGCGAGATAAccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggca                                            <  2:92087‑M2/134‑104 (MQ=255)                                                                                                                    gTGATTTCCTGCAGCGTCTGCTGCGAGATAAccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggca                                            >  1:92087‑M2/1‑31 (MQ=255)                                                                                                                     tGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCgg                                               <  7:105289/130‑1 (MQ=255)                                                                                                                     tGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCgg                                               >  8:105289/1‑130 (MQ=255)                                                                                                                             tGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTg                    >  2:141733/1‑149 (MQ=255)                                                                                                                                         tgcGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTGCAGCCGGCTg          >  4:43942/1‑147 (MQ=255)                                                                                                                                         tgcGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTGCAGCCGGCTg          >  1:260764/1‑147 (MQ=255)                                                                                                                                           cGAGATAACCGCTGTAGGCTGCGGCTTGGGGGAGCACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTGCAGCCGGCTGTa        <  7:80284/147‑1 (MQ=255)                                                                                                                                               aTAAccgctacttcaacgaggccctgcgccgcgaaatggccagcgtgatgccgttggccaaggggcctggcccgggcgtgatcgtggtgcgcccggcgatcacggcagtgtccaccagtaacgagggcctcaggccttacgaggtgatc  >  5:1028‑M2/1‑4 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ACTGGTGGACACTGCCGTGATCGCCGGGCGCACCACGATCACGCCCGGGCCAGGCCCCTTGGCCAACGGCATCACGCTGGCCATTTCGCGGCGCAGGGCCTCGTTGAAGTAGCGGGTGATTTCCTGCAGCGTCTGCTGCGAGATAACCGCTGTTGGCTGCGGCTTGGGGTAGAACTGGCTTGGCTCGACGAACACCTTGCTGTACTGGTTGATATTGACCTTGGGGTCGATCCAGCGCATCACCGGGTCACCCGACGGGCTCTTGGCTTCTTGCAGCCGGCTGTAGTCTTT  >  NC_002947/3561995‑3562285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.