New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3623866 =	45 (0.890)	3 (0.060)	3/244	NT	7.5%	coding (187/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3623927 =	31 (0.650)					coding (126/1344 nt)	PP_3194	hypothetical protein

CGCCGGGGCAGACCATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGC  >  NC_002947/3623722‑3624006                                                                                                                                                  |                                                                                                                                             atgatgagagagctctccaatgagttccctgcacctgcactgctccaccgtgttcgacgggactagcctgcacacccgccaacgacagacattgatcatcgaagactgcttgatcctccatgtcgggccatccgccgaggcacccCGTc                                                                                                                                           >  2:196463‑M1/146‑149 (MQ=255)  gCCGGGGCAGACCATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTcca                                                                                                                                         >  8:60202/1‑149 (MQ=255)        gCAGACCATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGcc                                                                                                                                   >  2:185982/1‑149 (MQ=255)         agagctcaccaatgagtgccctgcacctgcactgctccaccctgttcgacggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGcc                                                                                                                                   <  2:162710‑M1/12‑1 (MQ=255)          aGACCATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCg                                                                                                                                 >  1:198319/1‑149 (MQ=255)              cATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTc                                                                                                                                           <  1:212152/135‑1 (MQ=255)              cATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTc                                                                                                                                           >  2:212152/1‑135 (MQ=255)               aTGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCAt                                                                                                                            >  4:287948/1‑149 (MQ=255)                      tCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAAc                                                                                                                     <  4:145126/149‑1 (MQ=255)                        aCGCCGGCAGCCAGAACGTTCTGAGCTAAGAACACCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGACTTCCTAGCTCTGGGCATTGCCAAACGCAAGGTGGGTCTGCACGTCCACCAGCCCGGGCTTGACGAACTg                                                                                                                   >  6:307717/1‑149 (MQ=255)                        aCGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACt                                                                                                                    <  5:5436/148‑1 (MQ=255)                             ggCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGt                                                                                                              <  7:289556/149‑1 (MQ=255)                             ggCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGt                                                                                                              <  5:284542/149‑1 (MQ=255)                                   cAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCtt                                                                                                        <  8:4791/149‑1 (MQ=255)                                     gAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATg                                                                                                                           <  6:29518/128‑1 (MQ=255)                                     gAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATg                                                                                                                           >  5:29518/1‑128 (MQ=255)                                         gTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGt                                                                                                  >  2:251083/1‑149 (MQ=255)                                           ctccaccctgttcgacggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTcc                                                                                                                                          <  6:277519‑M1/5‑1 (MQ=255)                                           ctccaccctgttcgacggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTcc                                                                                                                                          >  5:277519‑M1/104‑108 (MQ=255)                                              caccctgttcgacggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGcc                                                                                              <  5:129830‑M1/49‑1 (MQ=255)                                               aGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCgg                                                                                            >  4:52031/1‑149 (MQ=255)                                                 cGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGCTTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCggg                                                                                           >  1:57387/1‑149 (MQ=255)                                                 cGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGt                                                                                          >  3:28595/1‑149 (MQ=255)                                                  gaagaaCAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGtt                                                                                         <  2:198319/149‑1 (MQ=255)                                                  gaagaaCAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGGCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGtt                                                                                         <  1:306660/149‑1 (MQ=255)                                                   aagaaCAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCAt                                                                                                                            >  8:251498/1‑113 (MQ=255)                                                   aagaaCAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCAt                                                                                                                            <  7:251498/113‑1 (MQ=255)                                                       aCAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGa                                                                                    <  3:287948/149‑1 (MQ=255)                                                           ggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGAGTTGTGGACgg                                                                                 >  1:162710‑M1/88‑149 (MQ=255)                                                            gcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACggg                                                                                >  6:129830‑M1/87‑149 (MQ=255)                                                              ccGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCATGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTg                                                                             >  7:258537/1‑149 (MQ=255)                                                                      cgcgAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCATGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTcggcg                                                                     <  8:258537/149‑1 (MQ=255)                                                                       gcgAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTcggcgg                                                                    >  7:104918/1‑149 (MQ=255)                                                                         gAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTggg                                                                                                           >  5:170667/1‑108 (MQ=255)                                                                         gAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTggg                                                                                                           <  6:170667/108‑1 (MQ=255)                                                                         gAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCGCGGCGGtt                                                                  <  1:185982/149‑1 (MQ=255)                                                                            aCTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGc                                                               <  3:254916/149‑1 (MQ=255)                                                                                               tgtcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACg                                             <  2:57387/149‑1 (MQ=255)                                                                                                gtcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGc                                            >  6:60686/1‑149 (MQ=255)                                                                                                 tcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGcc                                           >  2:141079/1‑149 (MQ=255)                                                                                                         ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                   >  5:177570/1‑149 (MQ=255)                                                                                                         ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                   >  2:267135/1‑149 (MQ=255)                                                                                                         ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTAGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                   >  3:98817/1‑149 (MQ=255)                                                                                                           ccTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                   <  3:52031/147‑1 (MQ=255)                                                                                                            cTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgatg                                 >  4:248697/1‑148 (MQ=255)                                                                                                                     ggCATTGCCAAAGGCCAGGTGGTGGTGGACGTCGACCAGCCCGGGCATGACGAACTGGCCGTTGGCTTCACGGTCGCAGGGTTGTGGACGTGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAAtg                          <  5:307717/146‑1 (MQ=255)                                                                                                                        aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgat                                  <  3:156059/135‑1 (MQ=255)                                                                                                                        aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgat                                  >  4:156059/1‑135 (MQ=255)                                                                                                                        aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAAtgtctgtc                    <  5:60686/149‑1 (MQ=255)                                                                                                                                aCGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCgg            <  6:177570/149‑1 (MQ=255)                                                                                                                                       gtgggtgTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCa     <  7:60202/149‑1 (MQ=255)                                                                                                                                          ggtgTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGc  <  8:104918/149‑1 (MQ=255)                                                                                                                                           gtgtGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCggg           >  4:282355/1‑139 (MQ=255)                                                                                                                                           gtgtGCACGTCCACCAGCCAGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCggg           <  3:282355/139‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             CGCCGGGGCAGACCATGGACGTCACGCCGGCAGCCAGAACGTGCTGAGCGAAGAACAGCCCCCGCAGGGCGCGAAACTCGTCGC‑TGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGC  >  NC_002947/3623722‑3624006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.