New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3623866 =	45 (0.890)	3 (0.060)	3/244	NT	7.5%	coding (187/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3623927 =	31 (0.650)					coding (126/1344 nt)	PP_3194	hypothetical protein

GCCCCCGCAGGGCGCGAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTT  >  NC_002947/3623779‑3624071                                                                                                                                                     |                                                                                                                                                 ggcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGAGTTGTGGACgg                                                                                                                                                  >  1:162710‑M1/88‑149 (MQ=255)  gcactggcctgcacacccgccaacgacagacattgatcatcgaagacggcgtgatccgccatgtcgggccaaccgccgaggcacccCGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACggg                                                                                                                                                 >  6:129830‑M1/87‑149 (MQ=255)     ccGCAGGGCGCGAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCATGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTg                                                                                                                                              >  7:258537/1‑149 (MQ=255)             cgcgAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCATGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTcggcg                                                                                                                                      <  8:258537/149‑1 (MQ=255)              gcgAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTcggcgg                                                                                                                                     >  7:104918/1‑149 (MQ=255)                gAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCGCGGCGGtt                                                                                                                                   <  1:185982/149‑1 (MQ=255)                   aCTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGc                                                                                                                                <  3:254916/149‑1 (MQ=255)                                     tgtcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACg                                                                                                              <  2:57387/149‑1 (MQ=255)                                      gtcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGc                                                                                                             >  6:60686/1‑149 (MQ=255)                                       tcgatgtcTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGcc                                                                                                            >  2:141079/1‑149 (MQ=255)                                               ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                                                                                    >  2:267135/1‑149 (MQ=255)                                               ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                                                                                    >  5:177570/1‑149 (MQ=255)                                               ttCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTAGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                                                                                    >  3:98817/1‑149 (MQ=255)                                                 ccTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCga                                                                                                    <  3:52031/147‑1 (MQ=255)                                                  cTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgatg                                                                                                  >  4:248697/1‑148 (MQ=255)                                                           ggCATTGCCAAAGGCCAGGTGGTGGTGGACGTCGACCAGCCCGGGCATGACGAACTGGCCGTTGGCTTCACGGTCGCAGGGTTGTGGACGTGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAAtg                                                                                           <  5:307717/146‑1 (MQ=255)                                                              aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgat                                                                                                   >  4:156059/1‑135 (MQ=255)                                                              aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCgat                                                                                                   <  3:156059/135‑1 (MQ=255)                                                              aTTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAAtgtctgtc                                                                                     <  5:60686/149‑1 (MQ=255)                                                                      aCGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCgg                                                                             <  6:177570/149‑1 (MQ=255)                                                                             gtgggtgTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCa                                                                      <  7:60202/149‑1 (MQ=255)                                                                                ggtgTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGc                                                                   <  8:104918/149‑1 (MQ=255)                                                                                 gtgtGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCggg                                                                            >  4:282355/1‑139 (MQ=255)                                                                                 gtgtGCACGTCCACCAGCCAGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCggg                                                                            <  3:282355/139‑1 (MQ=255)                                                                                      cccgtccacaacccggcgaccgtgaagcccacggccagttcgtcatgcccgggctggtggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGc                                                             >  6:129830‑M2/64‑149 (MQ=255)                                                                                       ccgtccacaactcggcgaccgtgaagcccacggccagttcgtcatgcccgggctggtggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGcc                                                            >  1:162710‑M2/63‑149 (MQ=255)                                                                                            CACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATc                                                                                               >  1:216286‑M1/1‑109 (MQ=255)                                                                                            CACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATc                                                                                               <  2:216286‑M1/109‑1 (MQ=255)                                                                                                 gCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAAtgt                                                                                          >  8:218564/1‑109 (MQ=255)                                                                                                    ggcgaccgtgaagcccacggccagttcgtcatgcccgggctggtggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTg                                               <  5:129830‑M2/100‑1 (MQ=255)                                                                                                            aCGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAgtg                                       >  8:301275/1‑149 (MQ=255)                                                                                                               aaCTGGCCGTAGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAgtgcag                                    <  4:98817/149‑1 (MQ=255)                                                                                                                  tGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAgtgcaggtg                                 >  1:118252/1‑149 (MQ=255)                                                                                                                    gCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAgtgcaggtg                                 >  1:33971/1‑147 (MQ=255)                                                                                                                      cGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGtgcaggtgcagg                             <  1:251083/149‑1 (MQ=255)                                                                                                                       gTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAggg                            >  3:24511/1‑149 (MQ=255)                                                                                                                                  ggTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGt                 <  3:248697/149‑1 (MQ=255)                                                                                                                                  ggTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGt                 <  1:141079/149‑1 (MQ=255)                                                                                                                                    tCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGa               <  7:301275/149‑1 (MQ=255)                                                                                                                                         ggctggtggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGctct          <  2:162710‑M2/137‑1 (MQ=255)                                                                                                                                            ttGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGctctct        >  5:166992/1‑148 (MQ=255)                                                                                                                                                ggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAg                                            >  5:277519‑M2/6‑108 (MQ=255)                                                                                                                                                ggacgGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAg                                            <  6:277519‑M2/103‑1 (MQ=255)                                                                                                                                                 gacgGGGTGCCTCGGCGGATGGCCCGACATGGAGGATCAAGCAGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCTAGTCCCGTCGAACACGGTGGAGCAGTGCAGGTGCAGGGAACTCATTGGAGAGCTCTCTCatcat  >  2:196463‑M2/5‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCCCCCGCAGGGCGCGAAACTCGTCGCTGGTCCAGATGTCGATGTCTTCCTCGCTCTGGGCATTGCCAAACGCCAGGTGGGTGTGCACGTCCACCAGCCCGGGCATGACGAACTGGCCGTGGGCTTCACGGTCGCCGGGTTGTGGACGGGGTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTT  >  NC_002947/3623779‑3624071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.