New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3676017 =	43 (0.850)	3 (0.070)	3/230	NT	8.3%	intergenic (+24/+68)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
	?	NC_002947	3676068 =	28 (0.620)					intergenic (+75/+17)	PP_3240/PP_5592	hypothetical protein/hypothetical protein

GGCCGAGCAGGCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATC  >  NC_002947/3675870‑3676162                                                                                                                                                    |                                                                                                                                                  ggCCGAGCAGGCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGtctc                                                                                                                                                   <  4:74275/148‑1 (MQ=255) gacgttgcaggaagccggtttgattcatgacggtagcgtggcggtaagcaatgatcaccagatcagcgtgcactacccgatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCg                                                                                                                                                  >  3:161192‑M1/148‑149 (MQ=255)      gctcggCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGcc                                                                                                                                             >  3:147447/5‑149 (MQ=255)       gcaggaagccggtttgattcatgacggtagcgtggcggtaagcaatgatcaccagatcagcgtgcactacccgatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCg                                                                                                                                            <  2:241600‑M1/8‑1 (MQ=255)       gCAGGCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTAGccc                                                                                                                                            >  6:187832/1‑148 (MQ=255)         aggaagccggtttgattcatgacggtagcgtggcggtaagcaatgatcaccagatcagcgtgcactacccgatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCgg                                                                                                                                           <  2:114571‑M1/9‑1 (MQ=255)         aGGCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCgg                                                                                                                                           >  1:63998/1‑148 (MQ=255)           gCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGc                                                                                                                                          >  7:126305/1‑147 (MQ=255)           gCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCCGcca                                                                                                                                        >  4:158028/1‑147 (MQ=255)           gCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCGAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGc                                                                                                                                          >  1:294952/1‑147 (MQ=255)             ggATAACAAGGGCGTCCTTGGTTTCGAGCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGTCTTTGAGAAAAAGGAGTAAACCACGGCCTTGATTTCCGGTCTCGTCGCCGGCAAGc                                                                                                                                      <  2:294952/148‑1 (MQ=255)              gATAAAAAGGCCGACCTTGGTTTCGACCCCGGCTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGc                                                                                                                                      >  4:303674/1‑148 (MQ=255)                   aaaGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCAtgtg                                                                                                                                <  7:5340/149‑1 (MQ=255)                       gCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGAt                                                                                                                            <  4:69483/149‑1 (MQ=255)                        ttcatgacggtagcgtggcggtaagcaatgatcaccagatcagcgtgcactacccgatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCg                                                                                                                                            >  2:162667‑M1/125‑132 (MQ=255)                               tGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTggg                                                                                                                    >  4:237592/1‑149 (MQ=255)                                    tCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCAGGCAAGCCAAGTGCGATGCCGTGGGAACCa                                                                                                               >  4:48091/1‑149 (MQ=255)                                     cGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCa                                                                                                               <  2:317714/148‑1 (MQ=255)                                            gtaagcaatgatcaccagatcagcgtgcactacccgatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCg                                                                                                       >  5:75529‑M1/105‑149 (MQ=255)                                                 cccGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCtt                                                                                                           >  2:180035/1‑140 (MQ=255)                                                 cccGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCtt                                                                                                           <  1:180035/140‑1 (MQ=255)                                                 cccGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGa                                                                                                   <  2:63998/148‑1 (MQ=255)                                                  ccGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACg                                                                                                 <  3:89101/149‑1 (MQ=255)                                                         ccGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGACTAAACCACGGCCTTGATTACCTGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCACCTTGCCGGCGACGGTcacc                                                                                           <  5:187832/148‑1 (MQ=255)                                                                 ccTCAAGTCGACCCACAGGGGCGGGCCAAGCCGCATAGAGAAATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGGCGCCGGCACGCCAAGAGGGAACCCAAGGGAACCCACATGCCGGCGACGGGCACCacacacac                                                                                   >  7:203234/1‑146 (MQ=255)                                                                 ccTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCCTGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAgacgac                                                                                  >  6:58213/1‑149 (MQ=255)                                                                   tCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCCAGCCATGGGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCCCAGACGACTg                                                                                >  1:241600/1‑149 (MQ=255)                                                                      aGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCa                                                                             <  8:126305/149‑1 (MQ=255)                                                                      aGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATAGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCa                                                                             <  1:61600/149‑1 (MQ=255)                                                                           aCCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCtt                                                                        <  8:203234/149‑1 (MQ=255)                                                                            cccACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCAAGTGCGATCCCATGGGAACCCGCTTGCCGGCGCCGGTCCCCACAGCCGACTGTCAGccat                                                                        >  2:17663/1‑146 (MQ=255)                                                                             ccACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTAGCCCGCAAGCCAAGTGCGATACCATGGGAAACAGCTTTCCCGCGACGGTAACCACAGACGACTGTAAGccata                                                                       >  6:130858/1‑145 (MQ=255)                                                                               gatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCg                                                                                                    >  4:98706‑M1/70‑117 (MQ=255)                                                                               gatcaagctgtcggcggcgggcgtagaggccgccaggcgcgctgaaggctgacagtcgtctgtggtgacCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCg                                                                                                    <  3:98706‑M1/48‑1 (MQ=255)                                                                                   gggCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAgcgcgc                                                                <  3:303674/149‑1 (MQ=255)                                                                                     gccggccAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCt                                                              >  6:326030/1‑149 (MQ=255)                                                                                           cAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTggcggc                                                        >  7:208529/1‑149 (MQ=255)                                                                                                   cTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTAcgc                                                >  7:156014/1‑149 (MQ=255)                                                                                                      gagaCATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCCTGTGGGATACCTTGGGAACCAGCTTGCCGGCGACGGTAACCACAGACGACAGTCAGCCTTAAGCGCCCCTGGCGGCCTCTAcgcccg                                             >  8:133197/1‑149 (MQ=255)                                                                                                           aTTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCccgccgcc                                        >  5:227235/1‑149 (MQ=255)                                                                                                               agaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTg                                                                                                                      >  4:282269/1‑67 (MQ=255)                                                                                                               agaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTg                                                                                                                      <  3:282269/67‑1 (MQ=255)                                                                                                                gaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGTCGCCGACAg                                   <  4:147447/149‑1 (MQ=255)                                                                                                                gaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACa                                    <  8:156014/148‑1 (MQ=255)                                                                                                                        aGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCg                           <  5:130858/149‑1 (MQ=255)                                                                                                                             aCCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAg                      <  7:133197/149‑1 (MQ=255)                                                                                                                                aCGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGc                   <  8:208529/149‑1 (MQ=255)                                                                                                                                aCGGCCTTGATTACCGGGCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGc                   <  7:107589/149‑1 (MQ=255)                                                                                                                                             ccGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGt      <  7:154813/149‑1 (MQ=255)                                                                                                                                              cGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTg             <  6:261481/141‑1 (MQ=255)                                                                                                                                              cGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTg             >  5:261481/1‑141 (MQ=255)                                                                                                                                                 tctcGTCGCCGGCAAGCCATGTCCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATc  <  3:48091/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGCCGAGCAGGCCGATAAAAAGGCCGACCTTGGTTTCGACCCCGACTCCCCGGATGCCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATC  >  NC_002947/3675870‑3676162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.