New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3676017 =	43 (0.850)	3 (0.070)	3/230	NT	8.3%	intergenic (+24/+68)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
	?	NC_002947	3676068 =	28 (0.620)					intergenic (+75/+17)	PP_3240/PP_5592	hypothetical protein/hypothetical protein

CCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCTGCAACGTCTT  >  NC_002947/3675926‑3676216                                                                                                                                               |                                                                                                                                                     ccGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGACTAAACCACGGCCTTGATTACCTGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCACCTTGCCGGCGACGGTcacc                                                                                                                                                 <  5:187832/148‑1 (MQ=255)         ccTCAAGTCGACCCACAGGGGCGGGCCAAGCCGCATAGAGAAATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGGCGCCGGCACGCCAAGAGGGAACCCAAGGGAACCCACATGCCGGCGACGGGCACCacacacac                                                                                                                                         >  7:203234/1‑146 (MQ=255)         ccTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCCTGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAgacgac                                                                                                                                        >  6:58213/1‑149 (MQ=255)           tCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCCAGCCATGGGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCCCAGACGACTg                                                                                                                                      >  1:241600/1‑149 (MQ=255)              aGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCa                                                                                                                                   <  8:126305/149‑1 (MQ=255)              aGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATAGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCa                                                                                                                                   <  1:61600/149‑1 (MQ=255)                   aCCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCtt                                                                                                                              <  8:203234/149‑1 (MQ=255)                    cccACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCAAGTGCGATCCCATGGGAACCCGCTTGCCGGCGCCGGTCCCCACAGCCGACTGTCAGccat                                                                                                                              >  2:17663/1‑146 (MQ=255)                     ccACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTAGCCCGCAAGCCAAGTGCGATACCATGGGAAACAGCTTTCCCGCGACGGTAACCACAGACGACTGTAAGccata                                                                                                                             >  6:130858/1‑145 (MQ=255)                           gggCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAgcgcgc                                                                                                                      <  3:303674/149‑1 (MQ=255)                             gccggccAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCt                                                                                                                    >  6:326030/1‑149 (MQ=255)                                   cAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTggcggc                                                                                                              >  7:208529/1‑149 (MQ=255)                                           cTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTAcgc                                                                                                      >  7:156014/1‑149 (MQ=255)                                              gagaCATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCCTGTGGGATACCTTGGGAACCAGCTTGCCGGCGACGGTAACCACAGACGACAGTCAGCCTTAAGCGCCCCTGGCGGCCTCTAcgcccg                                                                                                   >  8:133197/1‑149 (MQ=255)                                                   aTTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCccgccgcc                                                                                              >  5:227235/1‑149 (MQ=255)                                                        gaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGTCGCCGACAg                                                                                         <  4:147447/149‑1 (MQ=255)                                                        gaAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACa                                                                                          <  8:156014/148‑1 (MQ=255)                                                                aGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCg                                                                                 <  5:130858/149‑1 (MQ=255)                                                                     aCCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAg                                                                            <  7:133197/149‑1 (MQ=255)                                                                        aCGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGc                                                                         <  8:208529/149‑1 (MQ=255)                                                                        aCGGCCTTGATTACCGGGCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGc                                                                         <  7:107589/149‑1 (MQ=255)                                                                                     ccGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGt                                                            <  7:154813/149‑1 (MQ=255)                                                                                      cGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTg                                                                   >  5:261481/1‑141 (MQ=255)                                                                                      cGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTg                                                                   <  6:261481/141‑1 (MQ=255)                                                                                         tctcGTCGCCGGCAAGCCATGTCCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATc                                                        <  3:48091/149‑1 (MQ=255)                                                                                             GTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTg                                                    >  3:158028‑M1/1‑149 (MQ=255)                                                                                             GTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTg                                                    >  1:17663‑M1/1‑149 (MQ=255)                                                                                              TCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGc                                                   <  1:114571‑M1/149‑1 (MQ=255)                                                                                               cgccggcaagctggttcccaagggatcgcacatggcttgccggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATc                                                                                  >  4:98706‑M2/49‑117 (MQ=255)                                                                                               cgccggcaagctggttcccaagggatcgcacatggcttgccggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATc                                                                                  <  3:98706‑M2/69‑1 (MQ=255)                                                                                                  cggcaagctggttcccaagggatcgcacatggcttgccggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTAc                                               >  5:75529‑M2/46‑149 (MQ=255)                                                                                                        GCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCAc                                         >  6:227235‑M1/1‑149 (MQ=255)                                                                                                                 gATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCAc                                                                       <  6:233286/110‑1 (MQ=255)                                                                                                                 gATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCAc                                                                       >  5:233286/1‑110 (MQ=255)                                                                                                                      cTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGaa                           <  5:326030/149‑1 (MQ=255)                                                                                                                                      ccggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCt            <  2:114571‑M2/139‑1 (MQ=255)                                                                                                                                       cggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGaa                           >  2:162667‑M2/9‑132 (MQ=255)                                                                                                                                       cggcgacgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCTGc          <  2:241600‑M2/141‑1 (MQ=255)                                                                                                                                             cgGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCTGCAACGTc    >  3:161192‑M2/3‑149 (MQ=255)                                                                                                                                               gTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCTGCAACGTCtt  >  3:210169/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     CCGAAGACCCTCAAGTCGACCCACAGGGGCCGGCCAAGCCGCCTAGAGACATTGAGAAAAAGGAGTAAACCACGGCCTTGATTACCGGTCTCGTCGCCGGCAAGCCATGTGCGATCCCTTGGGAACCAGCTTGCCGGCGACGGTCACCACAGACGACTGTCAGCCTTCAGCGCGCCTGGCGGCCTCTACGCCCGCCGCCGACAGCTTGATCGGGTAGTGCACGCTGATCTGGTGATCATTGCTTACCGCCACGCTACCGTCATGAATCAAACCGGCTTCCTGCAACGTCTT  >  NC_002947/3675926‑3676216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.