New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3727148	29 (0.580)	4 (0.080)	4/248	NT	11.3%	coding (361/645 nt)	PP_3292	membrane protein
	?	NC_002947	= 3727189	35 (0.720)					coding (402/645 nt)	PP_3292	membrane protein

AAGCGCACCGTTGGCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGG  >  NC_002947/3727001‑3727296                                                                                                                                                    |                                                                                                                                                     aaGCGCACCGTTGGCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTtggct                                                                                                                                                     >  1:173098/1‑149 (MQ=255)     gcACCGTTGGCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCa                                                                                                                                                 <  3:16289/149‑1 (MQ=255)       aCCGTTGGCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCctcgcag                                                                                                                                               >  6:102205‑M1/1‑142 (MQ=255)              gCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCa                                                                                                                                        <  2:173098/149‑1 (MQ=255)                 aaGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTg                                                                                                                                     <  4:167712/149‑1 (MQ=255)                                     gagaCAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACg                                                                                                                                  <  6:305400/132‑1 (MQ=255)                                     gagaCAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACg                                                                                                                                  >  5:305400/1‑132 (MQ=255)                                          aGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCctcgcagttcgccacgatctgcgtcactgagcgccctgccag                                                                                                            >  2:314944‑M1/1‑107 (MQ=255)                                          aGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGg                                                                                                            <  5:96765‑M2/149‑2 (MQ=255)                                           ggCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgc                                                                                                           >  7:110526‑M2/1‑147 (MQ=255)                                                 cAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCctcgcagttcgccacgatctgcgtcactgagcgccctgccagccaaaag                                                                                                     <  5:102205‑M1/149‑50 (MQ=255)                                                  aGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCctcgcagttcgccacgatctgcgtcactgagcgccctgccagccaaaagg                                                                                                    <  1:314944‑M1/149‑51 (MQ=255)                                                     cgataCTGGCGGTCCTTCGCTCAGTGGCTCGGGAATCGAACCTCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGTGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCTTGGCGAACTGCGAGGCCAACCTGCAg                                                                                                 <  2:202344/145‑1 (MQ=255)                                                      cAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATAGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCCACCTGCAg                                                                                                 >  1:202344/1‑148 (MQ=255)                                                         aCTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCt                                                                                              >  6:64612/1‑148 (MQ=255)                                                               gTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTg                                                                                        >  4:71675/1‑148 (MQ=255)                                                                ttCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGa                                                                                      <  5:131855/149‑1 (MQ=255)                                                                gtCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCGGTTGGGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGa                                                                                      <  3:191000/148‑1 (MQ=255)                                                                       gCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATAccc                                                                               >  7:249228/1‑149 (MQ=255)                                                                       gCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATAcc                                                                                <  3:149636/148‑1 (MQ=255)                                                                          cAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCg                                                                              >  8:29729/1‑147 (MQ=255)                                                                           aGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGaa                                                                            <  3:71675/148‑1 (MQ=255)                                                                           aGTGGCTCGGGAATCGAACATCCT‑CTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCg                                                                              >  8:32376/1‑145 (MQ=255)                                                                               gCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGt                                                                                         >  5:70143/1‑131 (MQ=255)                                                                               gCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGt                                                                                         <  6:70143/131‑1 (MQ=255)                                                                                        tCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCAc                                                              <  8:249228/149‑1 (MQ=255)                                                                                          gAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACcg                                                            >  6:77110/1‑149 (MQ=255)                                                                                                    ctgGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCg                                                   <  6:45282/148‑1 (MQ=255)                                                                                                          gtgCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGTCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAAc                                             <  1:77802/148‑1 (MQ=255)                                                                                                             cTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGgt                                         <  6:96765/149‑1 (MQ=255)                                                                                                                     ccTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGt                                 >  2:180482/1‑149 (MQ=255)                                                                                                                     ccTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGt                                 <  1:307517/149‑1 (MQ=255)                                                                                                                               ctgGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTGGGCAAACCGGTGTGCACGTGCCTGgcg                         >  8:48869/1‑147 (MQ=255)                                                                                                                               ctgGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGgcg                         <  5:64612/147‑1 (MQ=255)                                                                                                                                   gCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGACCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGAcc                   >  6:35521/1‑149 (MQ=255)                                                                                                                                      caGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTc                <  7:63133/149‑1 (MQ=255)                                                                                                                                         gCACCTTTTGGCTGGCAGGGCGCTCAGTGACGAAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCATCATg             >  7:53635/1‑149 (MQ=255)                                                                                                                                            ccTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcct          <  1:314944‑M2/149‑100 (MQ=255)                                                                                                                                             cTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctg         <  5:102205‑M2/149‑101 (MQ=255)                                                                                                                                                   gCctcgcagttcgccacgatctgcgtcactgagcgccctgccagccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctgccagcc   >  7:110526‑M1/1‑2 (MQ=255)                                                                                                                                                    ctggcAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctgccagcct  >  2:314944‑M2/1‑42 (MQ=255)                                                                                                                                                    cctcgcagttcgccacgatctgcgtcactgagcgccctgccagccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctgccagcct  <  5:96765‑M1/149‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AAGCGCACCGTTGGCAAAGCCATTTTCAACGGCCAGGAGACAGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGG  >  NC_002947/3727001‑3727296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.