New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3727148	29 (0.580)	4 (0.080)	4/248	NT	11.3%	coding (361/645 nt)	PP_3292	membrane protein
	?	NC_002947	= 3727189	35 (0.720)					coding (402/645 nt)	PP_3292	membrane protein

AGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCGAAACCCCCATGCAGG  >  NC_002947/3727042‑3727334                                                                                                                                                    |                                                                                                                                                  aGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGg                                                                                                                                                  <  5:96765‑M2/149‑2 (MQ=255)  ggCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgc                                                                                                                                                 >  7:110526‑M2/1‑147 (MQ=255)            cgataCTGGCGGTCCTTCGCTCAGTGGCTCGGGAATCGAACCTCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGTGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCTTGGCGAACTGCGAGGCCAACCTGCAg                                                                                                                                       <  2:202344/145‑1 (MQ=255)             cAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATAGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCCACCTGCAg                                                                                                                                       >  1:202344/1‑148 (MQ=255)                aCTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCt                                                                                                                                    >  6:64612/1‑148 (MQ=255)                      gTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTg                                                                                                                              >  4:71675/1‑148 (MQ=255)                       ttCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGa                                                                                                                            <  5:131855/149‑1 (MQ=255)                       gtCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCGGTTGGGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGa                                                                                                                            <  3:191000/148‑1 (MQ=255)                              gCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATAccc                                                                                                                     >  7:249228/1‑149 (MQ=255)                              gCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATAcc                                                                                                                      <  3:149636/148‑1 (MQ=255)                                 cAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCg                                                                                                                    >  8:29729/1‑147 (MQ=255)                                  aGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGaa                                                                                                                  <  3:71675/148‑1 (MQ=255)                                  aGTGGCTCGGGAATCGAACATCCT‑CTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCg                                                                                                                    >  8:32376/1‑145 (MQ=255)                                      gCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGt                                                                                                                               <  6:70143/131‑1 (MQ=255)                                      gCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGt                                                                                                                               >  5:70143/1‑131 (MQ=255)                                               tCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCAc                                                                                                    <  8:249228/149‑1 (MQ=255)                                                 gAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACcg                                                                                                  >  6:77110/1‑149 (MQ=255)                                                           ctgGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCg                                                                                         <  6:45282/148‑1 (MQ=255)                                                                 gtgCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGTCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAAc                                                                                   <  1:77802/148‑1 (MQ=255)                                                                    cTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGgt                                                                               <  6:96765/149‑1 (MQ=255)                                                                            ccTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGt                                                                       <  1:307517/149‑1 (MQ=255)                                                                            ccTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGt                                                                       >  2:180482/1‑149 (MQ=255)                                                                                      ctgGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTGGGCAAACCGGTGTGCACGTGCCTGgcg                                                               >  8:48869/1‑147 (MQ=255)                                                                                      ctgGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGgcg                                                               <  5:64612/147‑1 (MQ=255)                                                                                          gCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGACCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGAcc                                                         >  6:35521/1‑149 (MQ=255)                                                                                             caGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTc                                                      <  7:63133/149‑1 (MQ=255)                                                                                                gCACCTTTTGGCTGGCAGGGCGCTCAGTGACGAAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCATCATg                                                   >  7:53635/1‑149 (MQ=255)                                                                                                   ccTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcct                                                <  1:314944‑M2/149‑100 (MQ=255)                                                                                                    cTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctg                                               <  5:102205‑M2/149‑101 (MQ=255)                                                                                                           ctggcAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctgccagcct                                        >  2:314944‑M2/1‑42 (MQ=255)                                                                                                                aGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCATCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGtgc                                   >  1:99645/1‑149 (MQ=255)                                                                                                                             aCGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCtt                      <  7:32376/149‑1 (MQ=255)                                                                                                                               gCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCa                                                             >  6:213984/1‑108 (MQ=255)                                                                                                                               gCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCa                                                             <  5:213984/108‑1 (MQ=255)                                                                                                                               gCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGt                    >  3:116017/1‑149 (MQ=255)                                                                                                                                cAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCCGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACTGGGTGCTGCGCATGGCCTTGtt                   <  7:48869/149‑1 (MQ=255)                                                                                                                                 aGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTc                  >  6:164900/1‑149 (MQ=255)                                                                                                                                  gATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTTGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCg                 <  7:29729/149‑1 (MQ=255)                                                                                                                                  gATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCg                 <  4:116017/149‑1 (MQ=255)                                                                                                                                    tCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCGaa               <  1:180482/149‑1 (MQ=255)                                                                                                                                              cTGCGAGgccaaaaggtgcctgtgcccagcagggccaggcacaacagcaccaccagcaggatgttcgattcccgagccactgagcgaaggaacgccagtctggcctgccagcctgtctcctggccgttgaaaatggctttgccaacggt     >  6:102205‑M2/1‑7 (MQ=255)                                                                                                                                                 cGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCGAAACCCCCATGCAgg  <  5:77110/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AGGCTGGCAGGCCAGACTGGCGTTCCTTCGCTCAGTGGCTCGGGAATCGAACATCCTGCTGGTGGTGCTGTTGTGCCTGGCCCTGCTGGGCACAGGCACCTTTTGGCTGGCAGGGCGCTCAGTGACGCAGATCGTGGCGAACTGCGAGGCCAACCTGCAGGCTCAAGTGGATATACCCGAAGATGAAAAACTCACCGCGCTTCTCGGCAAACCGGTGTGCACGTGCCTGGCGCAGACCTTCATGGAGCGCAACGGGGTGCTGCGCATGGCCTTGTTCGAAACCCCCATGCAGG  >  NC_002947/3727042‑3727334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.