New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 372884446 (0.910)4 (0.080) 4/242 NT 8.2% coding (715/891 nt) PP_3294 universal stress protein family protein
?NC_002947 = 3728883 46 (0.970)coding (754/891 nt) PP_3294 universal stress protein family protein

TCGGCTTACGACCTGCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATC  >  NC_002947/3728700‑3728990
                                                                                                                                                |                                                                                                                                                    
tcGGCTTACGACCTGCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGaa                                                                                                                                                    <  8:138449/147‑1 (MQ=255)
tcGGCTTACGACCTGCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATACACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAg                                                                                                                                                   <  4:133100/148‑1 (MQ=255)
     ttACGACCTGCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGtggcgatg                                                                                                                                              >  8:154350‑M1/1‑140 (MQ=255)
              gCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGcgcg                                                                                                                                  >  4:3788/1‑149 (MQ=255)
                   tCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATc                                                                                                                             <  1:87727/149‑1 (MQ=255)
                      ccATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGcgcg                                                                                                                                  <  4:102415/141‑1 (MQ=255)
                      ccATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGcgcg                                                                                                                                  >  3:102415/1‑141 (MQ=255)
                          gCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGccc                                                                                                                                         <  4:299435/130‑1 (MQ=255)
                          gCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGccc                                                                                                                                         >  3:299435/1‑130 (MQ=255)
                                    ccTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTcc                                                                                                                       <  5:159981/138‑1 (MQ=255)
                                    ccTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTcc                                                                                                                       >  6:159981/1‑138 (MQ=255)
                                    ccTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAc                                                                                                            <  1:154308‑M2/149‑2 (MQ=255)
                                        aCCTTGCCGGCCCTTGTGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctg                                                                                                        >  2:234533‑M2/1‑144 (MQ=255)
                                           ttGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaa                                                                                                      <  7:28262‑M2/148‑8 (MQ=255)
                                             gCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGaaaa                                                                                                    <  1:23710/148‑1 (MQ=255)
                                               cGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgc                                                                                                          <  1:33507‑M2/140‑4 (MQ=255)
                                               cGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgc                                                                                                          >  2:33507‑M2/1‑137 (MQ=255)
                                                ggCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccg                                                                                                  <  7:154350‑M1/149‑53 (MQ=255)
                                                 gCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGAt                                                                                               <  1:129615/149‑1 (MQ=255)
                                                  cccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTg                                                                                                 >  2:73001/1‑146 (MQ=255)
                                                  cccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTg                                                                                                 <  1:73001/146‑1 (MQ=255)
                                                   ccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATg                                                                                              >  1:69921/1‑148 (MQ=255)
                                                              ccAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCg                                                                                  <  2:69921/149‑1 (MQ=255)
                                                               cAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTg                                                                                                                                >  1:199991/1‑102 (MQ=255)
                                                               cAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTg                                                                                                                                <  2:199991/102‑1 (MQ=255)
                                                                    aCGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGGTCTGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCa                                                                               <  1:96840/148‑1 (MQ=255)
                                                                       cgAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTg                                                                          <  4:73245/148‑1 (MQ=255)
                                                                       cgAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTg                                                                          >  3:73245/1‑148 (MQ=255)
                                                                        gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGtggtgg                                                                                     >  8:44032/1‑136 (MQ=255)
                                                                        gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGtggtgg                                                                                     <  7:44032/136‑1 (MQ=255)
                                                                        gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCa                                                                        >  2:151241/1‑149 (MQ=255)
                                                                        gAGTCACTACAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgtggt                                                                                       <  6:304009/134‑1 (MQ=255)
                                                                                         tttCGATTCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCAATTCAGCGAAGG‑‑TGCGACACTGCGCGTGATCAAGTAATACATCGCAACGCAGAAAATTGATGCAGTCTTGGTCGGCACCTTGCAGCCAAGGCATTTGGcc                                                        >  2:157318/1‑148 (MQ=255)
                                                                                         tttCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggt                                                                                                <  4:8914‑M1/110‑55 (MQ=255)
                                                                                         tttCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggt                                                                                                >  3:8914‑M1/1‑56 (MQ=255)
                                                                                              aTGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAg                                                     <  6:113973/146‑1 (MQ=255)
                                                                                              aTGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAg                                                     >  5:113973/1‑146 (MQ=255)
                                                                                                  gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGACAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCg                                              >  3:257062/1‑149 (MQ=255)
                                                                                                  gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCAcc                                                                             <  4:186999/118‑1 (MQ=255)
                                                                                                  gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCAcc                                                                             <  4:191018/118‑1 (MQ=255)
                                                                                                   ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGc                                                                >  1:23940/1‑130 (MQ=255)
                                                                                                   ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGc                                                                <  2:23940/130‑1 (MQ=255)
                                                                                                   ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCgg                                             <  4:257062/149‑1 (MQ=255)
                                                                                                      gCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGa                                          >  3:283982/1‑149 (MQ=255)
                                                                                                      gCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGa                                          >  6:296369/1‑149 (MQ=255)
                                                                                                                aTGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgt                                                                                          >  4:66839/1‑91 (MQ=255)
                                                                                                                aTGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgt                                                                                          <  3:66839/91‑1 (MQ=255)
                                                                                                                   gCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGTAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCgg                             <  3:283906/149‑1 (MQ=255)
                                                                                                                     aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAg                                >  7:54454/1‑144 (MQ=255)
                                                                                                                     aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAg                                <  8:54454/144‑1 (MQ=255)
                                                                                                                     aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCt                           >  3:222875/1‑149 (MQ=255)
                                                                                                                      tCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCtt                          <  8:28262/149‑1 (MQ=255)
                                                                                                                        gCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTg                         >  4:164531/1‑148 (MQ=255)
                                                                                                                         cccACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGt                        >  6:180908/1‑148 (MQ=255)
                                                                                                                                  aCCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaa                                                     >  3:8914‑M2/1‑54 (MQ=255)
                                                                                                                                  aCCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaa                                                     <  4:8914‑M2/110‑57 (MQ=255)
                                                                                                                                    cGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggcc            <  7:154350‑M2/149‑98 (MQ=255)
                                                                                                                                    cGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCAcc            >  5:210735/1‑149 (MQ=255)
                                                                                                                                         tttCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTg         >  8:184578/1‑147 (MQ=255)
                                                                                                                                          ttCAGCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggccggcaa         <  7:28262‑M1/148‑142 (MQ=255)
                                                                                                                                           tCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTgcag      <  5:296369/148‑1 (MQ=255)
                                                                                                                                            cAGCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacacaagggccggcaaggt      >  2:234533‑M1/1‑5 (MQ=255)
                                                                                                                                             aGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGc               <  2:290617/137‑1 (MQ=255)
                                                                                                                                             aGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGc               >  1:290617/1‑137 (MQ=255)
                                                                                                                                              gCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggccg             >  2:33507‑M1/1‑3 (MQ=255)
                                                                                                                                              gCGtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggccg             <  1:33507‑M1/140‑138 (MQ=255)
                                                                                                                                                gtggcgatgtaggacttgatcacgcgcaggggcgcaccttcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggccggcaaggtcagg  <  1:154308‑M1/149‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
TCGGCTTACGACCTGCCCATCGCCATGCTGGCCAACCCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATC  >  NC_002947/3728700‑3728990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.