New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3728844	46 (0.910)	4 (0.080)	4/242	NT	8.2%	coding (715/891 nt)	PP_3294	universal stress protein family protein
	?	NC_002947	= 3728883	46 (0.970)					coding (754/891 nt)	PP_3294	universal stress protein family protein

CCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACTTCATTAA  >  NC_002947/3728736‑3729029                                                                                                                                                      |                                                                                                                                                   ccTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAc                                                                                                                                                   <  1:154308‑M2/149‑2 (MQ=255)     aCCTTGCCGGCCCTTGTGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctg                                                                                                                                               >  2:234533‑M2/1‑144 (MQ=255)        ttGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaa                                                                                                                                             <  7:28262‑M2/148‑8 (MQ=255)          gCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGaaaa                                                                                                                                           <  1:23710/148‑1 (MQ=255)            cGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgc                                                                                                                                                 <  1:33507‑M2/140‑4 (MQ=255)            cGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgc                                                                                                                                                 >  2:33507‑M2/1‑137 (MQ=255)              gCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGAt                                                                                                                                      <  1:129615/149‑1 (MQ=255)               cccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTg                                                                                                                                        <  1:73001/146‑1 (MQ=255)               cccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTg                                                                                                                                        >  2:73001/1‑146 (MQ=255)                ccTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATg                                                                                                                                     >  1:69921/1‑148 (MQ=255)                           ccAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCg                                                                                                                         <  2:69921/149‑1 (MQ=255)                                 aCGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGGTCTGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCa                                                                                                                      <  1:96840/148‑1 (MQ=255)                                    cgAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTg                                                                                                                 <  4:73245/148‑1 (MQ=255)                                    cgAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTg                                                                                                                 >  3:73245/1‑148 (MQ=255)                                     gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGtggtgg                                                                                                                            <  7:44032/136‑1 (MQ=255)                                     gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGtggtgg                                                                                                                            >  8:44032/1‑136 (MQ=255)                                     gAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCa                                                                                                               >  2:151241/1‑149 (MQ=255)                                     gAGTCACTACAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgtggt                                                                                                                              <  6:304009/134‑1 (MQ=255)                                                      tttCGATTCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCAATTCAGCGAAGG‑‑TGCGACACTGCGCGTGATCAAGTAATACATCGCAACGCAGAAAATTGATGCAGTCTTGGTCGGCACCTTGCAGCCAAGGCATTTGGcc                                                                                               >  2:157318/1‑148 (MQ=255)                                                           aTGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAg                                                                                            <  6:113973/146‑1 (MQ=255)                                                           aTGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAg                                                                                            >  5:113973/1‑146 (MQ=255)                                                               gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGACAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCg                                                                                     >  3:257062/1‑149 (MQ=255)                                                               gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCAcc                                                                                                                    <  4:186999/118‑1 (MQ=255)                                                               gTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCAcc                                                                                                                    <  4:191018/118‑1 (MQ=255)                                                                ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGc                                                                                                       <  2:23940/130‑1 (MQ=255)                                                                ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGc                                                                                                       >  1:23940/1‑130 (MQ=255)                                                                ttGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCgg                                                                                    <  4:257062/149‑1 (MQ=255)                                                                   gCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGa                                                                                 >  3:283982/1‑149 (MQ=255)                                                                   gCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGa                                                                                 >  6:296369/1‑149 (MQ=255)                                                                             aTGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgt                                                                                                                                 <  3:66839/91‑1 (MQ=255)                                                                             aTGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAgt                                                                                                                                 >  4:66839/1‑91 (MQ=255)                                                                                gCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGTAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCgg                                                                    <  3:283906/149‑1 (MQ=255)                                                                                  aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAg                                                                       >  7:54454/1‑144 (MQ=255)                                                                                  aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAg                                                                       <  8:54454/144‑1 (MQ=255)                                                                                  aTCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCt                                                                  >  3:222875/1‑149 (MQ=255)                                                                                   tCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCtt                                                                 <  8:28262/149‑1 (MQ=255)                                                                                     gCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTg                                                                >  4:164531/1‑148 (MQ=255)                                                                                      cccACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGt                                                               >  6:180908/1‑148 (MQ=255)                                                                                               aCCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaa                                                                                            <  4:8914‑M2/110‑57 (MQ=255)                                                                                               aCCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaa                                                                                            >  3:8914‑M2/1‑54 (MQ=255)                                                                                                 cGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggcc                                                   <  7:154350‑M2/149‑98 (MQ=255)                                                                                                 cGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCAcc                                                   >  5:210735/1‑149 (MQ=255)                                                                                                      tttCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTg                                                >  8:184578/1‑147 (MQ=255)                                                                                                        tCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTgcag                                             <  5:296369/148‑1 (MQ=255)                                                                                                          aGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGc                                                      >  1:290617/1‑137 (MQ=255)                                                                                                          aGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGc                                                      <  2:290617/137‑1 (MQ=255)                                                                                                               aGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGa                                     <  3:3788/149‑1 (MQ=255)                                                                                                               aGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGa                                     <  7:184578/149‑1 (MQ=255)                                                                                                                                  tGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGcgccc                    <  4:222875/149‑1 (MQ=255)                                                                                                                                     tCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGcgcccgcc                 <  5:180908/149‑1 (MQ=255)                                                                                                                                         gTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCt             <  4:283982/149‑1 (MQ=255)                                                                                                                                            cTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAgg                                                                                           >  6:310879/1‑68 (MQ=255)                                                                                                                                            cTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAgg                                                                                           <  5:310879/68‑1 (MQ=255)                                                                                                                                            cTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGc                                                           <  7:24492/100‑1 (MQ=255)                                                                                                                                            cTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGc                                                           >  8:24492/1‑100 (MQ=255)                                                                                                                                              aCATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACtt        >  6:175614/1‑149 (MQ=255)                                                                                                                                              aCATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACt         >  5:270496/1‑148 (MQ=255)                                                                                                                                               cATCGCCAcgctgaaatgccggtgcgtgtgggcgatgccatgtgcatcggccaacgcatcgaaaggcagctgcagtgactcgcgtaattggtttacccaagggccggcaaggtcagggttggccagcatggcgatgggcaggtcgtaa        >  8:154350‑M2/1‑8 (MQ=255)                                                                                                                                                    ccACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACTTCAtt    >  6:323626/1‑147 (MQ=255)                                                                                                                                                    ccACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACTTCAtt    <  5:323626/147‑1 (MQ=255)                                                                                                                                                    ccACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACTTCATTaa  <  6:210735/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CCTGACCTTGCCGGCCCTTGGGTAAACCAATTACGCGAGTCACTGCAGCTGCCTTTCGATGCGTTGGCCGATGCACATGGCATCGCCCACACGCACCGGCATTTCAGCGAAGG‑‑TGCGCCCCTGCGCGTGATCAAGTCCTACATCGCCACGCTGAAAATTGATGCAGTGGTGGTCGGCACCGTGCAGCCCAGGCATTGGGCCAAGGTGATCGGCGATACCACCGAGCGGCTTGTCAGCCATGCACCGTGCAGCATCCTGACGATCAGGTCTGCGCCCGCCAGCTGACTTCATTAA  >  NC_002947/3728736‑3729029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.