New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4121685	38 (0.750)	6 (0.120)	6/248	NT	14.5%	coding (102/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	= 4121700	34 (0.700)					coding (87/789 nt)	PP_3624	hypothetical protein

CGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTG  >  NC_002947/4121542‑4121830                                                                                                                                                |                                                                                                                                                  cGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGc                                                                                                                                              >  5:228466/1‑149 (MQ=255)  gTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCg                                                                                                                                             >  6:180902/1‑149 (MQ=255)     aCCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGt                                                                                                                                           <  2:222450/148‑1 (MQ=255)       cACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTacggctgaccg                                                                                                                                        >  2:37969‑M1/1‑138 (MQ=255)       cACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCa                                                                                                                                         <  8:116855/148‑1 (MQ=255)       cACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAg                                                                                                                                        >  7:164388/1‑149 (MQ=255)       cACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCATGTGGCGGt                                                                                                                                           >  7:116855/1‑146 (MQ=255)                gCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTaggca                                                                                                                               <  4:129881‑M2/149‑6 (MQ=255)                  gTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatg                                                                                                                             <  6:228466/149‑1 (MQ=255)                   tAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTacggctgaccgccacaggcaacc                                                                                                                            <  1:37969‑M1/149‑24 (MQ=255)                   tAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatgc                                                                                                                            <  6:133691/149‑1 (MQ=255)                     aaCCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatgca                                                                                                                           <  8:164388/148‑1 (MQ=255)                     aaCCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTACGGGTTGCCTacggctgaccgccacaggcaacacg                                                                                                                          >  7:271511‑M1/1‑124 (MQ=255)                              tATCTCCAGCCCCAAGTGCTTGCGCAGTTATTTGAGCAGGTCGGCATTGGCACCGATCTGTCGCTGAGGGTTCAGCGGGTGGCGCCACAGGTACGGGTGGTATTCGGGGTTGCCTacggctgaccgccacaggcaacccggaatacc                                                                                                                   <  8:271511‑M1/147‑33 (MQ=255)                                    cAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGtt                                                                                                               <  8:229701/145‑1 (MQ=255)                                        cccAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTACAGCCAg                                                                                                       >  1:98881/1‑149 (MQ=255)                                         ccAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGCGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAgg                                                                                                      >  3:79349/1‑149 (MQ=255)                                          cAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAggg                                                                                                     >  4:313336/1‑149 (MQ=255)                                                cTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGgcagca                                                                                               <  4:303730/149‑1 (MQ=255)                                                cTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGgcagc                                                                                                <  3:313336/148‑1 (MQ=255)                                                    cccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGTGGCGTATTCCGGGTTACCTGTGGCGGTCAGCCGTAGGCATGCCTCATCCGCTGTTGCAGCCAGGGGCACCAGTgc                                                                                           >  6:237309/1‑148 (MQ=255)                                                     ccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGa                                                                                           >  3:248463/1‑148 (MQ=255)                                                      cAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGa                                                                                           >  8:16129/1‑147 (MQ=255)                                                            tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                    >  2:147640/1‑148 (MQ=255)                                                            tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                    <  1:147640/148‑1 (MQ=255)                                                            tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                    <  4:248463/148‑1 (MQ=255)                                                                  cAGGTCGGCATTGGGACCGATCAGTCGATGAGGGTTCAGCGGGTGGGGCCACATGTACGGGGGGTATTCCGTGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCATTGACATGCACATCAgg                                                                              <  5:237309/148‑1 (MQ=255)                                                                  cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                             <  4:260582/149‑1 (MQ=255)                                                                  cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                             <  7:16129/149‑1 (MQ=255)                                                                  cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                             <  5:180902/149‑1 (MQ=255)                                                                           aTTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGt                                                                    >  8:102693/1‑149 (MQ=255)                                                                           aTTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGt                                                                    >  2:215129/1‑149 (MQ=255)                                                                                          tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCACGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGcc                                                     <  5:238929/149‑2 (MQ=255)                                                                                          tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTACGGCTGACCGCCACaggcaacccggaa                                                                                                                       >  4:27534‑M2/1‑70 (MQ=255)                                                                                          tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTACGGCTGACCGCCACaggcaacccggaa                                                                                                                       <  3:27534‑M2/83‑14 (MQ=255)                                                                                            gCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGc                                                                 >  2:115525/1‑135 (MQ=255)                                                                                             cTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGTCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGa                                                  <  4:79349/149‑1 (MQ=255)                                                                                              tGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAg                                                            <  3:112294/138‑1 (MQ=255)                                                                                                       aGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGa                                        >  6:118984/1‑149 (MQ=255)                                                                                                                      aGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGa                          >  8:209364/1‑148 (MQ=255)                                                                                                                        gTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAac                       <  1:215129/149‑1 (MQ=255)                                                                                                                            ggggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCAGCACATGAAACAccc                   >  2:286476/1‑149 (MQ=255)                                                                                                                              ggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcac                              >  2:50159/1‑136 (MQ=255)                                                                                                                              ggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcac                              <  1:50159/136‑1 (MQ=255)                                                                                                                                ggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTaggcaaccccgaataccacccgtacctgtggcgccacccgctgaaccctcagcgacagatcggtgccaatgccgacctgctcaaataactgcgcaagcacttggggctggagata                 <  8:271511‑M2/147‑116 (MQ=255)                                                                                                                                    ttCCGGGTTGCCTgtggcggtcagccgtaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcga                                                                             >  4:27534‑M1/1‑13 (MQ=255)                                                                                                                                    ttCCGGGTTGCCTgtggcggtcagccgtaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcga                                                                             <  3:27534‑M1/83‑71 (MQ=255)                                                                                                                                       cGTGTTGCCTGTGGCGGTCAGCCGTaggcaacccgtaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtt        >  7:271511‑M2/1‑25 (MQ=255)                                                                                                                                       cGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGc        >  1:240584/1‑149 (MQ=255)                                                                                                                                       cGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCAGCACATGAAACACCCGGCGATCCGGc        <  1:286476/149‑1 (MQ=255)                                                                                                                                         ggTTGCCTGTGGCGGTCAGCCGTaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggttta      <  1:37969‑M2/149‑127 (MQ=255)                                                                                                                                            tGCCTacggctgaccgccacaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtttacgc   <  4:129881‑M1/149‑145 (MQ=255)                                                                                                                                             gCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTg  >  4:170155/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  CGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTG  >  NC_002947/4121542‑4121830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.