New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4121685	38 (0.750)	6 (0.120)	6/248	NT	14.5%	coding (102/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	= 4121700	34 (0.700)					coding (87/789 nt)	PP_3624	hypothetical protein

GCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTGGCCAAAGG  >  NC_002947/4121557‑4121838                                                                                                                                                |                                                                                                                                           gCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTaggca                                                                                                                                       <  4:129881‑M2/149‑6 (MQ=255)   gTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatg                                                                                                                                     <  6:228466/149‑1 (MQ=255)    tAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatgc                                                                                                                                    <  6:133691/149‑1 (MQ=255)      aaCCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGgcatgca                                                                                                                                   <  8:164388/148‑1 (MQ=255)                     cAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGtt                                                                                                                       <  8:229701/145‑1 (MQ=255)                         cccAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTACAGCCAg                                                                                                               >  1:98881/1‑149 (MQ=255)                          ccAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGCGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAgg                                                                                                              >  3:79349/1‑149 (MQ=255)                           cAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAggg                                                                                                             >  4:313336/1‑149 (MQ=255)                                 cTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGgcagca                                                                                                       <  4:303730/149‑1 (MQ=255)                                 cTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGgcagc                                                                                                        <  3:313336/148‑1 (MQ=255)                                     cccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGTGGCGTATTCCGGGTTACCTGTGGCGGTCAGCCGTAGGCATGCCTCATCCGCTGTTGCAGCCAGGGGCACCAGTgc                                                                                                   >  6:237309/1‑148 (MQ=255)                                      ccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGa                                                                                                   >  3:248463/1‑148 (MQ=255)                                       cAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGa                                                                                                   >  8:16129/1‑147 (MQ=255)                                             tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                            <  1:147640/148‑1 (MQ=255)                                             tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                            <  4:248463/148‑1 (MQ=255)                                             tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGcac                                                                                            >  2:147640/1‑148 (MQ=255)                                                   cAGGTCGGCATTGGGACCGATCAGTCGATGAGGGTTCAGCGGGTGGGGCCACATGTACGGGGGGTATTCCGTGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCATTGACATGCACATCAgg                                                                                      <  5:237309/148‑1 (MQ=255)                                                   cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                                     <  7:16129/149‑1 (MQ=255)                                                   cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                                     <  5:180902/149‑1 (MQ=255)                                                   cAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGa                                                                                     <  4:260582/149‑1 (MQ=255)                                                            aTTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGt                                                                            >  8:102693/1‑149 (MQ=255)                                                            aTTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGt                                                                            >  2:215129/1‑149 (MQ=255)                                                                           tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCACGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGcc                                                             <  5:238929/149‑2 (MQ=255)                                                                           tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTACGGCTGACCGCCACaggcaacccggaa                                                                                                                               >  4:27534‑M2/1‑70 (MQ=255)                                                                           tCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTACGGCTGACCGCCACaggcaacccggaa                                                                                                                               <  3:27534‑M2/83‑14 (MQ=255)                                                                             gCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGc                                                                         >  2:115525/1‑135 (MQ=255)                                                                              cTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGTCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGa                                                          <  4:79349/149‑1 (MQ=255)                                                                               tGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAg                                                                    <  3:112294/138‑1 (MQ=255)                                                                                        aGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGa                                                >  6:118984/1‑149 (MQ=255)                                                                                                       aGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGa                                  >  8:209364/1‑148 (MQ=255)                                                                                                         gTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAac                               <  1:215129/149‑1 (MQ=255)                                                                                                             ggggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCAGCACATGAAACAccc                           >  2:286476/1‑149 (MQ=255)                                                                                                               ggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcac                                      >  2:50159/1‑136 (MQ=255)                                                                                                               ggggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcac                                      <  1:50159/136‑1 (MQ=255)                                                                                                                 ggTATTCCGGGTTGCCTGTGGCGGTCAGCCGTaggcaaccccgaataccacccgtacctgtggcgccacccgctgaaccctcagcgacagatcggtgccaatgccgacctgctcaaataactgcgcaagcacttggggctggagata                         <  8:271511‑M2/147‑116 (MQ=255)                                                                                                                        cGTGTTGCCTGTGGCGGTCAGCCGTaggcaacccgtaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtt                >  7:271511‑M2/1‑25 (MQ=255)                                                                                                                        cGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGc                >  1:240584/1‑149 (MQ=255)                                                                                                                        cGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCAGCACATGAAACACCCGGCGATCCGGc                <  1:286476/149‑1 (MQ=255)                                                                                                                          ggTTGCCTGTGGCGGTCAGCCGTaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggttta              <  1:37969‑M2/149‑127 (MQ=255)                                                                                                                              gCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTg          >  4:170155/1‑149 (MQ=255)                                                                                                                                     gCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTGGCCAAAg   >  5:234576/1‑149 (MQ=255)                                                                                                                                      cGGTCAGCCGTaggcaacccggaataccccccgtacctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtttacgccgggccgtg  >  2:37969‑M2/1‑11 (MQ=255)                                                                                                                                       ggTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGc                                                                                   <  6:102990/67‑1 (MQ=255)                                                                                                                                       ggTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGc                                                                                   >  5:102990/1‑67 (MQ=255)                                                                                                                                                |                                                                                                                                           GCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCAGCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGCGTAGTGGCCAAAGG  >  NC_002947/4121557‑4121838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.