New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247363	43 (0.850)	3 (0.060)	3/244	NT	6.9%	coding (554/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247385	40 (0.840)					coding (532/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

GCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGG  >  NC_002947/4247217‑4247509                                                                                                                                                   |                                                                                                                                                    gcgcTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACgg                                                                                                                                                   <  8:277512/149‑1 (MQ=255)         aGCCGTGTACTGAGTTGCTGCAACAGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTaccac                                                                                                                                           <  4:241026/149‑1 (MQ=255)           cggtgtAGTGTGTTGCTGCAACTGCTCCGCCGGGTGCAACGGGCCA‑CCCCGGAAATTTTCTTCGGCCGCTGGGGGGCGGAATGCTTCTGGGCTGCGTGCTGGTGGGTTTGGGGGCAGGGGTGGCCACGCCCGGGACGGCGTac                                                                                                                                              <  2:161313/141‑1 (MQ=255)           ccGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCA‑CCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTac                                                                                                                                              >  1:161313/1‑143 (MQ=255)             gtgtACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCa                                                                                                                                       <  5:77738/149‑1 (MQ=255)                 aCTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCA‑GGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCt                                                                                                                                  >  2:251225/1‑149 (MQ=255)                   tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTc                                                                                                                                 >  3:24204/1‑149 (MQ=255)                   tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTc                                                                                                                                 >  7:256857/1‑149 (MQ=255)                     aGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTc                                                                                                                                 <  4:99825/147‑1 (MQ=255)                       ttGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgt                                                                                                                             <  7:261158‑M2/149‑3 (MQ=255)                          ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGG‑CAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccg                                                                                                                         >  1:251225‑M2/1‑143 (MQ=255)                                   cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACtggagcggtgaggtggtacgccgtcccgggcgtgg                                                                                                                  <  2:281707‑M1/148‑36 (MQ=255)                                   cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtccc                                                                                                                          <  4:274595‑M2/140‑6 (MQ=255)                                   cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtccc                                                                                                                          >  3:274595‑M2/1‑135 (MQ=255)                                   cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGAc                                                                                                                   <  8:305059/147‑1 (MQ=255)                                    tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGACCACGCCCGGGACGGCGTaccac                                                                                                                                           >  8:215794/1‑122 (MQ=255)                                    tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGACCACGCCCGGGACGGCGTaccac                                                                                                                                           <  7:215794/122‑1 (MQ=255)                                      aGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATg                                                                                                              >  5:254237/1‑149 (MQ=255)                                      aGCCGCGTGAAACGCGCCTCCCCCGGCAATGATCATCGGCCGCTGGGGGTCGGCAAGCTTCAGGGCAGCATGCTCGTGGGTTTGGCGGCACGGGTGGACACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGAGCGAt                                                                                                               <  8:256857/148‑1 (MQ=255)                                        ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgcc                                                                                                            <  6:137896/149‑1 (MQ=255)                                        ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgcc                                                                                                            >  8:198236/1‑149 (MQ=255)                                           cgTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccgcc                                                                                                         <  7:19645/149‑1 (MQ=255)                                             tGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAg                                                                                                       <  6:164030/149‑1 (MQ=255)                                                aaCGCGCCACCCCCGGCAATGATCATAGGCCGGTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACtggagcggtgaggtggtacgccgtcccgggcg                                                                                                                     <  3:290735‑M1/132‑33 (MQ=255)                                                aaCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACtggagcggtgaggtggtacgccgtcccgggcg                                                                                                                     >  4:290735‑M1/1‑100 (MQ=255)                                                aaCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCa                                                                                                        <  8:297306/145‑1 (MQ=255)                                                aaCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCa                                                                                                        >  7:297306/1‑145 (MQ=255)                                                            ccGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCAc                                                                                       >  8:94186/1‑149 (MQ=255)                                                                   tGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAAtg                                                                                >  2:206954/1‑149 (MQ=255)                                                                     aTCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAAtgt                                                                               <  7:94186/148‑1 (MQ=255)                                                                        aTAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCAc                                                                           <  6:254237/149‑1 (MQ=255)                                                                           ggCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                        <  7:198236/149‑1 (MQ=255)                                                                                     cggcggcAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGt                                                              <  1:206954/149‑1 (MQ=255)                                                                                            aaGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAggg                                                                                           <  5:199532/113‑1 (MQ=255)                                                                                            aaGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAggg                                                                                           >  6:199532/1‑113 (MQ=255)                                                                                               cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCTCCGAAATGTGCACCGGGcgcg                                                                   >  3:181906/1‑134 (MQ=255)                                                                                               cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCTCCGAAATGTGCACCGGGcgcg                                                                   <  4:181906/134‑1 (MQ=255)                                                                                               cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                        <  8:194404/129‑1 (MQ=255)                                                                                               cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                        >  7:194404/1‑129 (MQ=255)                                                                                                ttCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGaa                                                   >  5:8834/1‑149 (MQ=255)                                                                                                              cTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGgc                                       <  7:259018/147‑1 (MQ=255)                                                                                                                cGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGgcgcgc                                   >  3:121557/1‑149 (MQ=255)                                                                                                                 gAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGgcgcgcg                                  <  4:24204/149‑1 (MQ=255)                                                                                                                  aGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGgcgcgcgc                                 >  6:53386/1‑149 (MQ=255)                                                                                                                         cgcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGACCACTGCCCAGGCGCGCGCGATCAGc                          >  5:60858/1‑149 (MQ=255)                                                                                                                          gcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGATCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCg                                                     <  1:228330/122‑1 (MQ=255)                                                                                                                          gcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCg                                                     >  2:228330/1‑121 (MQ=255)                                                                                                                                  gCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGCTGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCCGGCGCGCGCGATCAGCTCGGGCAAg                 >  7:198691/1‑149 (MQ=255)                                                                                                                                      gCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGGCGCGCGCGATCAGCTCGGGCAAgtcgt             >  1:121552/1‑149 (MQ=255)                                                                                                                                      gCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGGCGCGCGCGATCAGCTCGGGCAAgtc               <  6:8834/147‑1 (MQ=255)                                                                                                                                       ccACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgag              <  2:281707‑M2/148‑114 (MQ=255)                                                                                                                                          cGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgtt                           >  4:290735‑M2/1‑32 (MQ=255)                                                                                                                                          cGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccaccggcctatgatcattgccgggggtggcgcgtt                           <  3:290735‑M2/132‑101 (MQ=255)                                                                                                                                          cGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGcc         <  5:53386/149‑1 (MQ=255)                                                                                                                                              cGGGACtggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgcctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgagcagttgcag      >  1:251225‑M1/1‑6 (MQ=255)                                                                                                                                               gggACtggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgag              >  3:274595‑M1/1‑5 (MQ=255)                                                                                                                                               gggACtggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgag              <  4:274595‑M1/140‑136 (MQ=255)                                                                                                                                                  aCtggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgagcagttgcagcaa  <  7:261158‑M1/149‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAACACTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGG  >  NC_002947/4247217‑4247509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.