New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247363	43 (0.850)	3 (0.060)	3/244	NT	6.9%	coding (554/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247385	40 (0.840)					coding (532/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

TTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACGCCGTG  >  NC_002947/4247239‑4247530                                                                                                                                                   |                                                                                                                                                      ttGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgt                                                                                                                                                     <  7:261158‑M2/149‑3 (MQ=255)    ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGG‑CAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccg                                                                                                                                                 >  1:251225‑M2/1‑143 (MQ=255)             cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtccc                                                                                                                                                  <  4:274595‑M2/140‑6 (MQ=255)             cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtccc                                                                                                                                                  >  3:274595‑M2/1‑135 (MQ=255)             cTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGAc                                                                                                                                           <  8:305059/147‑1 (MQ=255)                aGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATg                                                                                                                                      >  5:254237/1‑149 (MQ=255)                aGCCGCGTGAAACGCGCCTCCCCCGGCAATGATCATCGGCCGCTGGGGGTCGGCAAGCTTCAGGGCAGCATGCTCGTGGGTTTGGCGGCACGGGTGGACACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGAGCGAt                                                                                                                                       <  8:256857/148‑1 (MQ=255)                  ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgcc                                                                                                                                    <  6:137896/149‑1 (MQ=255)                  ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgcc                                                                                                                                    >  8:198236/1‑149 (MQ=255)                     cgTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccgcc                                                                                                                                 <  7:19645/149‑1 (MQ=255)                       tGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAg                                                                                                                               <  6:164030/149‑1 (MQ=255)                          aaCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCa                                                                                                                                <  8:297306/145‑1 (MQ=255)                          aaCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCa                                                                                                                                >  7:297306/1‑145 (MQ=255)                                      ccGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCAc                                                                                                               >  8:94186/1‑149 (MQ=255)                                             tGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAAtg                                                                                                        >  2:206954/1‑149 (MQ=255)                                               aTCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAAtgt                                                                                                       <  7:94186/148‑1 (MQ=255)                                                  aTAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCAc                                                                                                   <  6:254237/149‑1 (MQ=255)                                                     ggCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                                                <  7:198236/149‑1 (MQ=255)                                                               cggcggcAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGt                                                                                      <  1:206954/149‑1 (MQ=255)                                                                      aaGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAggg                                                                                                                   <  5:199532/113‑1 (MQ=255)                                                                      aaGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAggg                                                                                                                   >  6:199532/1‑113 (MQ=255)                                                                         cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCTCCGAAATGTGCACCGGGcgcg                                                                                           <  4:181906/134‑1 (MQ=255)                                                                         cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCTCCGAAATGTGCACCGGGcgcg                                                                                           >  3:181906/1‑134 (MQ=255)                                                                         cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                                                >  7:194404/1‑129 (MQ=255)                                                                         cTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCgg                                                                                                <  8:194404/129‑1 (MQ=255)                                                                          ttCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGaa                                                                           >  5:8834/1‑149 (MQ=255)                                                                                        cTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGgc                                                            <  7:259018/147‑1 (MQ=255)                                                                                          cGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGgcgcgc                                                        >  3:121557/1‑149 (MQ=255)                                                                                           gAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGgcgcgcg                                                       <  4:24204/149‑1 (MQ=255)                                                                                            aGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGgcgcgcgc                                                      >  6:53386/1‑149 (MQ=255)                                                                                                   cgcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAC‑CA‑‑CTGCCCAGGCGCGCGCGATCAGc                                               >  5:60858/1‑149 (MQ=255)                                                                                                    gcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGATCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCg                                                                             <  1:228330/122‑1 (MQ=255)                                                                                                    gcgGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCg                                                                             >  2:228330/1‑121 (MQ=255)                                                                                                            gCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGCTGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCCGGCGCGCGCGATCAGCTCGGGCAAg                                      >  7:198691/1‑149 (MQ=255)                                                                                                                gCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAgtcgt                                  >  1:121552/1‑149 (MQ=255)                                                                                                                gCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAgtc                                    <  6:8834/147‑1 (MQ=255)                                                                                                                 ccACGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgttgcacgcggctgag                                      <  2:281707‑M2/148‑114 (MQ=255)                                                                                                                    cGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgcgtt                                                   >  4:290735‑M2/1‑32 (MQ=255)                                                                                                                    cGCCCGGGACGGCGTACCACCTCACCGCTCCAgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgccgcccaccggcctatgatcattgccgggggtggcgcgtt                                                   <  3:290735‑M2/132‑101 (MQ=255)                                                                                                                    cGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGcc                              <  5:53386/149‑1 (MQ=255)                                                                                                                                   accaccTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCg                >  6:76576/1‑148 (MQ=255)                                                                                                                                   accaccTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCg                >  5:265459/1‑148 (MQ=255)                                                                                                                                   accaccTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGAGAAGAAAAATCGAAGGAGGCTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCAc                  >  1:103983/1‑149 (MQ=255)                                                                                                                                     caccTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCg                                            <  2:273629/118‑1 (MQ=255)                                                                                                                                     caccTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCg                                            >  1:273629/1‑118 (MQ=255)                                                                                                                                        cTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGaaa          <  5:76576/149‑1 (MQ=255)                                                                                                                                           aCCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCAGCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACg       >  5:270836/1‑149 (MQ=255)                                                                                                                                             cGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACGcc     >  8:88446/1‑149 (MQ=255)                                                                                                                                               cTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACGCCGt   <  8:261158/149‑1 (MQ=255)                                                                                                                                                  cAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACGCCGTg  <  2:121552/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      TTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACG‑TCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTCGCTGTCGAA‑CA‑‑CTGCCCAGGCGCGCGCGATCAGCTCGGGCAAGTCGTCGCCCTGCAGGGCCACCGCAGAAAACGCCGTG  >  NC_002947/4247239‑4247530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.