New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4249328	43 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (699/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4249399	48 (1.000)					coding (628/2118 nt)	PP_3724	acyl‑CoA synthetase

CTGACGCGGATCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTT  >  NC_002947/4249197‑4249471                                                                                                                                    |                                                                                                                                                cTGACGCGGATCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAgcgc                                                                                                                                <  4:223448/149‑1 (MQ=255)    aCGCGGATCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGACCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGcc                                                                                                                               <  6:48015/147‑1 (MQ=255)          aTCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAgc                                                                                                                       <  4:244607/149‑1 (MQ=255)          aTCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAgc                                                                                                                       >  2:105325/1‑149 (MQ=255)             aCGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAgcggc                                                                                                                    >  1:270972/1‑149 (MQ=255)                cccAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGcgcg                                                                                                                 >  1:46326/1‑149 (MQ=255)                  cAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCggg                                                                                                               <  1:105325/149‑1 (MQ=255)                      cgcTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCaaa                                                                                                           <  2:270972/149‑1 (MQ=255)                        cTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGc                                                                                                         >  8:66801/1‑149 (MQ=255)                           gAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGcc                                                                                                        <  7:249895/147‑1 (MQ=255)                                ggCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACg                                                                                                 >  6:125604/1‑149 (MQ=255)                                   tGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGttc                                                                                              >  7:89973/1‑149 (MQ=255)                                    gTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGttct                                                                                             <  7:66801/149‑1 (MQ=255)                                       gTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGTGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCa                                                                                          <  2:302090/149‑1 (MQ=255)                                       gTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGttcttc                                                                                           >  2:321922/1‑148 (MQ=255)                                        tACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCaa                                                                                         <  5:125604/149‑1 (MQ=255)                                          cAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCgg                                                                                                     <  1:122929/135‑1 (MQ=255)                                          cAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCgg                                                                                                     >  2:122929/1‑135 (MQ=255)                                          cAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAg                                                                                        <  4:64130/148‑1 (MQ=255)                                             cGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCtt                                                                                    >  5:228512/1‑149 (MQ=255)                                                aTCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCctgcacctggaaggcttgaagaacgtgccgggctttgcccgcgccgcttgcaaggcgctgcag                                                                                  >  3:172243‑M1/1‑85 (MQ=255)                                                    gAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTg                                                                             <  6:96851/149‑1 (MQ=255)                                                     aGCCGGTCATCGAGCTGGTTTGGCTGAGCGCCAGTTCAGCGCCGTTCTGCGAAACGCCCGGCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCATGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGc                                                                            <  5:74917/149‑1 (MQ=255)                                                             aaCGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCtt                                                                                    >  5:10314/1‑133 (MQ=255)                                                             aaCGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCtt                                                                                    <  6:10314/133‑1 (MQ=255)                                                             aaCGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgat                                                                    <  4:177489‑M2/149‑7 (MQ=255)                                                                 aGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCctgcacctggaaggcttgaagaacgtgccgggctttgcccgcgccgcttgcaaggcgctgcagcagggcacgccgatcatt                                                                <  1:15048‑M1/149‑82 (MQ=255)                                                                  gCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCctgcacctggaaggcttgaagaacgtgccgggctttgcccgcgccgcttgcaaggcgctgcagcagggcacgccgatcattg                                                               <  4:172243‑M1/149‑83 (MQ=255)                                                                  gCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCgg                                                               <  3:177489/149‑1 (MQ=255)                                                                          ggCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGt                                                       >  7:251437/1‑149 (MQ=255)                                                                           gCTGAGCGCCAGTTCAGCGCCGATCTGCGATCCGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCGGATGGCGGTTACCCGTg                                                      >  3:21911/1‑149 (MQ=255)                                                                           gCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTg                                                      <  2:46326/149‑1 (MQ=255)                                                                           gCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCAGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTg                                                      >  1:180077/1‑149 (MQ=255)                                                                             tGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTggg                                                    >  2:175072/1‑149 (MQ=255)                                                                                 cgcCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGgtcgt                                                >  4:278991/1‑149 (MQ=255)                                                                                     aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                     >  1:14693/1‑140 (MQ=255)                                                                                     aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                     <  2:14693/140‑1 (MQ=255)                                                                                     aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGag                                            <  1:321922/149‑1 (MQ=255)                                                                                          aGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAgcagca                                       >  3:140614/1‑149 (MQ=255)                                                                                                     gagAAACGCGCGTCTTCAATGCAATGCTAGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGAAAGTTCTTCAAGCCTGCCAGGTGCAGGCAGATGGCGGTTACCCGTGTGTCGTCGAGCAGCACATACATCAGc                            >  4:61521/3‑149 (MQ=255)                                                                                                        aaaCGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCg                         <  8:89973/149‑1 (MQ=255)                                                                                                           cGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGcc                      <  3:278991/149‑1 (MQ=255)                                                                                                              ccGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCcaca                   >  3:279720/1‑149 (MQ=255)                                                                                                              ccGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCcaca                   >  3:187778/1‑149 (MQ=255)                                                                                                                gTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACAcc                 <  1:175072/149‑1 (MQ=255)                                                                                                                  cTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACAcc                 >  4:152668/1‑147 (MQ=255)                                                                                                                          caatgATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagc       <  4:172243‑M2/149‑68 (MQ=255)                                                                                                                          caatgATCGGCGTGCCCTGCAGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTgcgc        <  2:180077/148‑1 (MQ=255)                                                                                                                           aatgATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagct      <  1:15048‑M2/149‑69 (MQ=255)                                                                                                                               aTCGGCctgcacctggaaggcttgaagaacgtgccgggctttgcccgcgccgcttgcaaggcgctgcagcagggcacgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagctcgtt  <  4:177489‑M1/149‑144 (MQ=255)                                                                                                                                  ggCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                     <  4:161300/95‑1 (MQ=255)                                                                                                                                  ggCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                     >  3:161300/1‑95 (MQ=255)                                                                                                                                    |                                                                                                                                                CTGACGCGGATCACGCCCAGGCGCTGGAACAGGCTGTCGTACAACGCATCGGAGCCGGACAACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTT  >  NC_002947/4249197‑4249471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.