New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4249328	43 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (699/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4249399	48 (1.000)					coding (628/2118 nt)	PP_3724	acyl‑CoA synthetase

AACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGTTGC  >  NC_002947/4249257‑4249539                                                                                                                                               |                                                                                                                                             aaCGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgat                                                                                                                                        <  4:177489‑M2/149‑7 (MQ=255)      gCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCgg                                                                                                                                   <  3:177489/149‑1 (MQ=255)              ggCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGt                                                                                                                           >  7:251437/1‑149 (MQ=255)               gCTGAGCGCCAGTTCAGCGCCGATCTGCGATCCGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCGGATGGCGGTTACCCGTg                                                                                                                          >  3:21911/1‑149 (MQ=255)               gCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTg                                                                                                                          <  2:46326/149‑1 (MQ=255)               gCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCAGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTg                                                                                                                          >  1:180077/1‑149 (MQ=255)                 tGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTggg                                                                                                                        >  2:175072/1‑149 (MQ=255)                     cgcCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGgtcgt                                                                                                                    >  4:278991/1‑149 (MQ=255)                         aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         <  2:14693/140‑1 (MQ=255)                         aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         >  1:14693/1‑140 (MQ=255)                         aGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGag                                                                                                                <  1:321922/149‑1 (MQ=255)                              aGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAgcagca                                                                                                           >  3:140614/1‑149 (MQ=255)                                         gagAAACGCGCGTCTTCAATGCAATGCTAGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGAAAGTTCTTCAAGCCTGCCAGGTGCAGGCAGATGGCGGTTACCCGTGTGTCGTCGAGCAGCACATACATCAGc                                                                                                >  4:61521/3‑149 (MQ=255)                                            aaaCGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCg                                                                                             <  8:89973/149‑1 (MQ=255)                                               cGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGcc                                                                                          <  3:278991/149‑1 (MQ=255)                                                  ccGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCcaca                                                                                       >  3:187778/1‑149 (MQ=255)                                                  ccGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCcaca                                                                                       >  3:279720/1‑149 (MQ=255)                                                    gTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACAcc                                                                                     <  1:175072/149‑1 (MQ=255)                                                      cTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACAcc                                                                                     >  4:152668/1‑147 (MQ=255)                                                              caatgATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagc                                                                           <  4:172243‑M2/149‑68 (MQ=255)                                                              caatgATCGGCGTGCCCTGCAGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTgcgc                                                                            <  2:180077/148‑1 (MQ=255)                                                               aatgATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagct                                                                          <  1:15048‑M2/149‑69 (MQ=255)                                                                      ggCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         >  3:161300/1‑95 (MQ=255)                                                                      ggCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         <  4:161300/95‑1 (MQ=255)                                                                         gTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         <  2:90132/92‑1 (MQ=255)                                                                         gTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTgg                                                                                                                         >  1:90132/1‑92 (MQ=255)                                                                             ccTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGagcagc                                                                                                            >  6:68863/1‑101 (MQ=255)                                                                             ccTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGagcagc                                                                                                            <  5:68863/101‑1 (MQ=255)                                                                             ccTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAg                                                            <  4:275975/149‑1 (MQ=255)                                                                             ccTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAg                                                            >  3:275975/1‑149 (MQ=255)                                                                              ctgctgCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAgg                                                           <  4:279720/149‑1 (MQ=255)                                                                                gctgcAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCGGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTgcgc                                                                            <  5:153089/130‑1 (MQ=255)                                                                                gctgcAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCGGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTgcgc                                                                            >  6:153089/1‑130 (MQ=255)                                                                                 ctgcAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGgccgatcattgcattgaagacgggcgtttcgcagatcggcgctgaactggcgctcagccacaccagctcgttgtccggctccgat                                                         >  3:172243‑M2/1‑63 (MQ=255)                                                                                         ccTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGcc                                                >  5:209044/1‑149 (MQ=255)                                                                                              cAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCCGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTgg                                           >  4:204662/1‑149 (MQ=255)                                                                                               aaGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTgg                                           >  7:110706/1‑148 (MQ=255)                                                                                                  cgtcgccGGCAAAGCCCTGCACGTTCTTCAACCCTTCCAGGAGCAGGCCGATCGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGATGCCGACCGAGGCCATGAAGGCCACTGGCAgg                                       <  4:21911/146‑1 (MQ=255)                                                                                                       cgGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCg                                  <  4:187778/149‑1 (MQ=255)                                                                                                         ggCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGt                                >  2:47122/1‑149 (MQ=255)                                                                                                          gCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAg                                                                                  >  7:71108/1‑98 (MQ=255)                                                                                                          gCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAg                                                                                  <  8:71108/98‑1 (MQ=255)                                                                                                           cAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCg                              >  3:101404/1‑149 (MQ=255)                                                                                                            aaaGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGc                             <  4:140614/149‑1 (MQ=255)                                                                                                            aaaGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGc                             >  4:275358/1‑149 (MQ=255)                                                                                                                       cGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAgg                  <  3:152668/149‑1 (MQ=255)                                                                                                                         ttcttcAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGtt                <  7:233319/149‑1 (MQ=255)                                                                                                                                aGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACAGCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGTCGCGGTCGCTCATGGACAGGTTGTAGGc          >  1:202505/1‑148 (MQ=255)                                                                                                                                 gCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGt                                                     >  4:298370/1‑104 (MQ=255)                                                                                                                                    ttCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGt     >  8:108738/1‑149 (MQ=255)                                                                                                                                    ttCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGt     >  2:146047/1‑149 (MQ=255)                                                                                                                                       cAGGTGCAGGGCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGTTGc  <  3:61521/149‑1 (MQ=255)                                                                                                                                        aGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGTTGc  >  8:99216/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                             AACGAGCTGGTGTGGCTGAGCGCCAGTTCAGCGCCGATCTGCGAAACGCCCGTCTTCAATGCAATGATCGGCGTGCCCTGCTGCAGCGCCTTGCAAGCGGCGCGGGCAAAGCCCGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGTTGTAGGCGAAGTTGC  >  NC_002947/4249257‑4249539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.