New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4352363	38 (0.750)	3 (0.060)	3/246	NT	7.0%	coding (21/303 nt)	PP_3825	hypothetical protein
	?	NC_002947	= 4352407	44 (0.920)					coding (65/303 nt)	PP_3825	hypothetical protein

GACCACATCCAGGCGGTTTTGCTCCCTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGAA  >  NC_002947/4352216‑4352509                                                                                                                                                    |                                                                                                                                                   gACCACCTCCCGGCGGTTTTGCTCCCTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGcgcg                                                                                                                                                   <  7:305467/149‑1 (MQ=255)                   ttGCTCCCTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGAc                                                                                                                                  >  8:3476/1‑148 (MQ=255)                       tCCCTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGatat                                                                                                                             >  8:268905/1‑149 (MQ=255)                        cccTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAg                                                                                                                                                 <  6:228465/128‑1 (MQ=255)                        cccTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAg                                                                                                                                                 >  5:228465/1‑128 (MQ=255)                         ccTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTAAACGAGGACGATATTg                                                                                                                           >  7:119372/1‑149 (MQ=255)                         ccTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCACTCAGTCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTg                                                                                                                           >  1:265880/1‑149 (MQ=255)                             cTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTgtcg                                                                                                                        <  5:221719/148‑1 (MQ=255)                                  gCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCtgggagcactcgatgacgacaatatcgtcctcgt                                                                                                                  >  8:109036‑M1/1‑115 (MQ=255)                                          aTCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTc                                                                                                           <  8:79591/148‑1 (MQ=255)                                               cGCCCGGCGATCAACGCGTCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAg                                                                                                       >  3:78573‑M2/1‑146 (MQ=255)                                               cGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCa                                                                                                        <  7:268905/146‑1 (MQ=255)                                               cGCCCGGCGATCAACGCGGCAGGGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcg                                                                                                     >  8:234028‑M2/1‑146 (MQ=255)                                                gCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgc                                                                                                    <  1:1933‑M2/149‑5 (MQ=255)                                                    ggCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCtgggagcactcgatgacgacaatatcgtcctcgttgaggtgctcgcgctggt                                                                                                <  7:109036‑M1/149‑53 (MQ=255)                                                       gATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCtgggagcactcgatgacgacaatatcgtcctcgttgaggtgctcgcgctggtgta                                                                                             <  5:193429‑M1/149‑56 (MQ=255)                                                            actcgtcAGGGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATAACATGAAATTCGTACCCCAGCGCTAGCACCTCAACGATGACGATCTTGTCTTCATCGAGTTCTCCCATCGATGCAATATCCGc                                                                                        <  6:223879/143‑1 (MQ=255)                                                            aCGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGc                                                                                        >  3:126398/1‑149 (MQ=255)                                                              gcgGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCt                                                                                      <  5:243703/149‑1 (MQ=255)                                                                   aGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTgt                                                                                                                          >  4:140297/1‑108 (MQ=255)                                                                   aGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTgt                                                                                                                          <  3:140297/108‑1 (MQ=255)                                                                       tAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAacga                                                                             >  1:239743/1‑149 (MQ=255)                                                                             cacaTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCa                                                                        >  1:256925/1‑148 (MQ=255)                                                                              acaTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAAc                                                                      >  1:41077/1‑149 (MQ=255)                                                                                aTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACtt                                                                    >  4:287774/1‑149 (MQ=255)                                                                                 tCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTc                                                                   <  4:204364/149‑1 (MQ=255)                                                                                       tATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGc                                                             >  4:188908/1‑149 (MQ=255)                                                                                       tATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGc                                                             >  1:279383/1‑149 (MQ=255)                                                                                              tgcttttgcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAg                                                       >  2:114128/1‑148 (MQ=255)                                                                                                   ttgcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAAcg                                                   <  2:41077/147‑1 (MQ=255)                                                                                                     gcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGc                                                                                                 >  8:207882/1‑99 (MQ=255)                                                                                                     gcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAAcggcgg                                               >  8:222551/1‑149 (MQ=255)                                                                                                       aGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGcc                                             >  2:48821/1‑149 (MQ=255)                                                                                                       aGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGcc                                             >  1:298785/1‑149 (MQ=255)                                                                                                         aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCg                                            >  3:282819/1‑148 (MQ=255)                                                                                                         aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGt                                           >  4:168226/1‑149 (MQ=255)                                                                                                         aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGt                                           <  2:279383/149‑1 (MQ=255)                                                                                                            cAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCa                                         <  7:222551/148‑1 (MQ=255)                                                                                                             aaaCCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCAta                                       <  7:3476/149‑1 (MQ=255)                                                                                                                 cTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCAtaccta                                   >  3:204713/1‑149 (MQ=255)                                                                                                                           aTCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACggcggc                         <  5:288157/149‑1 (MQ=255)                                                                                                                           aTCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACggcggc                         >  6:288157/1‑149 (MQ=255)                                                                                                                                    aaTTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTc                   >  3:20687/1‑146 (MQ=255)                                                                                                                                    aaTTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCgag                <  4:126398/149‑1 (MQ=255)                                                                                                                                         gTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGt            <  2:1933/148‑1 (MQ=255)                                                                                                                                          tACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatc          <  5:193429‑M2/149‑95 (MQ=255)                                                                                                                                          tACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGttt          <  4:282819/149‑1 (MQ=255)                                                                                                                                           acacCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTc         >  5:28118/1‑149 (MQ=255)                                                                                                                                             acCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatcgcc       <  7:109036‑M2/149‑98 (MQ=255)                                                                                                                                                 gcgctgggagcactcgatgacgacaatatcgtcctcgttgaggtgctcgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatcgccgggc   <  1:1933‑M1/149‑146 (MQ=255)                                                                                                                                                  cgctgggagcactcgatgacgacaatatcgtcctcgttgaggtgctcgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttaccctgccgcgttgatcgccgggcg  >  8:234028‑M1/1‑3 (MQ=255)                                                                                                                                                    ctgggagcactcgatgacgacaatatcgtcctcgttgaggtgctcgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgacgcgttgatcgccgggcg  >  3:78573‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GACCACATCCAGGCGGTTTTGCTCCCTGCTTTGGCAGAATTATCTACGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGAA  >  NC_002947/4352216‑4352509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.