New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4352363	38 (0.750)	3 (0.060)	3/246	NT	7.0%	coding (21/303 nt)	PP_3825	hypothetical protein
	?	NC_002947	= 4352407	44 (0.920)					coding (65/303 nt)	PP_3825	hypothetical protein

CGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCACCATCGATACC  >  NC_002947/4352262‑4352555                                                                                                                                                  |                                                                                                                                                      cGCCCGGCGATCAACGCGTCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAg                                                                                                                                                      >  3:78573‑M2/1‑146 (MQ=255) cGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCa                                                                                                                                                       <  7:268905/146‑1 (MQ=255) cGCCCGGCGATCAACGCGGCAGGGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcg                                                                                                                                                    >  8:234028‑M2/1‑146 (MQ=255)  gCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgc                                                                                                                                                   <  1:1933‑M2/149‑5 (MQ=255)              actcgtcAGGGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATAACATGAAATTCGTACCCCAGCGCTAGCACCTCAACGATGACGATCTTGTCTTCATCGAGTTCTCCCATCGATGCAATATCCGc                                                                                                                                       <  6:223879/143‑1 (MQ=255)              aCGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGc                                                                                                                                       >  3:126398/1‑149 (MQ=255)                gcgGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCt                                                                                                                                     <  5:243703/149‑1 (MQ=255)                         tAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAacga                                                                                                                            >  1:239743/1‑149 (MQ=255)                               cacaTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCa                                                                                                                       >  1:256925/1‑148 (MQ=255)                                acaTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAAc                                                                                                                     >  1:41077/1‑149 (MQ=255)                                  aTCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACtt                                                                                                                   >  4:287774/1‑149 (MQ=255)                                   tCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTc                                                                                                                  <  4:204364/149‑1 (MQ=255)                                         tATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGc                                                                                                            >  4:188908/1‑149 (MQ=255)                                         tATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGc                                                                                                            >  1:279383/1‑149 (MQ=255)                                                tgcttttgcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAg                                                                                                      >  2:114128/1‑148 (MQ=255)                                                     ttgcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAAcg                                                                                                  <  2:41077/147‑1 (MQ=255)                                                       gcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGc                                                                                                                                                >  8:207882/1‑99 (MQ=255)                                                       gcAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAAcggcgg                                                                                              >  8:222551/1‑149 (MQ=255)                                                         aGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGcc                                                                                            >  2:48821/1‑149 (MQ=255)                                                         aGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGcc                                                                                            >  1:298785/1‑149 (MQ=255)                                                           aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCg                                                                                           >  3:282819/1‑148 (MQ=255)                                                           aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGt                                                                                          >  4:168226/1‑149 (MQ=255)                                                           aTCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGt                                                                                          <  2:279383/149‑1 (MQ=255)                                                              cAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCa                                                                                        <  7:222551/148‑1 (MQ=255)                                                               aaaCCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCAta                                                                                      <  7:3476/149‑1 (MQ=255)                                                                   cTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCAtaccta                                                                                  >  3:204713/1‑149 (MQ=255)                                                                             aTCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACggcggc                                                                        <  5:288157/149‑1 (MQ=255)                                                                             aTCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACggcggc                                                                        >  6:288157/1‑149 (MQ=255)                                                                                      aaTTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTc                                                                  >  3:20687/1‑146 (MQ=255)                                                                                      aaTTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCgag                                                               <  4:126398/149‑1 (MQ=255)                                                                                           gTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGt                                                           <  2:1933/148‑1 (MQ=255)                                                                                            tACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatc                                                         <  5:193429‑M2/149‑95 (MQ=255)                                                                                            tACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGttt                                                         <  4:282819/149‑1 (MQ=255)                                                                                             acacCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTc                                                        >  5:28118/1‑149 (MQ=255)                                                                                               acCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatcgcc                                                      <  7:109036‑M2/149‑98 (MQ=255)                                                                                                       gAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGAt                                             <  6:28118/149‑1 (MQ=255)                                                                                                                aaCGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCgaga                                                              <  2:26867/124‑1 (MQ=255)                                                                                                                aaCGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCgaga                                                              >  1:26867/1‑124 (MQ=255)                                                                                                                aaCGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTAcc                                    <  4:204713/149‑1 (MQ=255)                                                                                                                aaCGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTAcc                                    <  2:256925/149‑1 (MQ=255)                                                                                                                 aCGAGGACGATATTGTCGTCATCGAGTGCTCCCAgcgctggtgtacgaatttcatgtgatgctccgcaaggtttggatctgcaaaagcaaaagataccacgatgtgccgttacactgccgcgttgatcgccgggcgtagataattctgc                                    >  8:109036‑M2/1‑34 (MQ=255)                                                                                                                    aGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGc                                <  2:239743/149‑1 (MQ=255)                                                                                                                      gACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCAc                              >  6:101901/1‑149 (MQ=255)                                                                                                                               gtcgtcATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCt                      <  3:287774/148‑1 (MQ=255)                                                                                                                                  gtcATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACCGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGaa                  <  2:265880/149‑1 (MQ=255)                                                                                                                                   tcATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGaa                  >  4:672/1‑148 (MQ=255)                                                                                                                                     aTCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACa                >  1:217630/1‑148 (MQ=255)                                                                                                                                       cGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTACGCAGCTTCAAGAACGGCGGCAGTCATACCTACCAAGGCCGCCATTTCCAGAAGTTTACGGCGA‑AGATAACCGTACCCAGCACCGTCTTCTGGAACATCa             >  2:251521/1‑149 (MQ=255)                                                                                                                                        gAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGACAGATCACCGTACCCAGCACCGGCTTCTGGAACATc              <  1:48821/148‑1 (MQ=255)                                                                                                                                        gAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCAc            <  2:298785/149‑1 (MQ=255)                                                                                                                                             cTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCACCAGCg       >  3:269477/1‑149 (MQ=255)                                                                                                                                             cTCCCAGCGCTGCAATATCCGCCGGATGAACGACGCCAACATCCGCACCTTCAAGAACCGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCACCATCg       <  6:331238/149‑1 (MQ=255)                                                                                                                                                  aGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTgg                    >  3:249182/1‑131 (MQ=255)                                                                                                                                                  aGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCACCATCGATAcc  <  3:168226/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGCCCGGCGATCAACGCGGCAGTGTAACGGCACATCGTGGTATCTTTTGCTTTTGCAGATCCAAACCTTGCGGAGCATCACATGAAATTCGTACACCAGCGCGAGCACCTCAACGAGGACGATATTGTCGTCATCGAGTGCTCCCAGCGCTGCAATATCCGCCTGATGAACGACGCCAACTTCCGCAGCTTCAAGAACGGCGGCCGTCATACCTACCACGGCGGCCATTTCGAGAAGTTTCCGGCGA‑AGATCACCGTACCCAGCACCGGCTTCTGGAACATCACCATCGATACC  >  NC_002947/4352262‑4352555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.