New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4578324 =	47 (0.930)	4 (0.080)	4/242	NT	10.1%	coding (1787/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4578364 =	27 (0.570)					coding (1747/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme

CTGCGCGTCGTCACCGATCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGT  >  NC_002947/4578176‑4578465                                                                                                                                                     |                                                                                                                                              cccatttcccatgatgaggtggtgcacggcaagcattcgctgatcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcga                                                                                                                                               >  7:13937‑M1/149‑149 (MQ=255)   catttcccatgatgaggtggtgcacggcaagcattcgctgatcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGt                                                                                                                                             <  2:64417‑M1/3‑1 (MQ=255)             aCCGATCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGcgtcgt                                                                                                                                   >  3:174804/1‑149 (MQ=255)               cGATCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTgg                                                                                                                                 >  1:141969/1‑149 (MQ=255)                gATCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGt                                                                                                                                >  7:106355/1‑149 (MQ=255)                  tCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTc                                                                                                                              <  4:174804/149‑1 (MQ=255)                    aaCCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCa                                                                                                                            >  6:322791/1‑149 (MQ=255)                       cACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACt                                                                                                                          >  2:176427/1‑148 (MQ=255)                       cACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACt                                                                                                                          >  5:163825/1‑148 (MQ=255)                         cTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCAc                                                                                                                       <  4:56590/149‑1 (MQ=255)                           ggAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGc                                                                                                                     >  7:209618/1‑149 (MQ=255)                            gAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACg                                                                                                                      <  3:275335/147‑1 (MQ=255)                            gAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGc                                                                                                                     >  1:130966/1‑148 (MQ=255)                             aaaCCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCa                                                                                                                   <  8:209618/149‑1 (MQ=255)                                 ccTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTgg                                                                                                               >  8:289691/1‑149 (MQ=255)                                  cattcgctgatcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGc                                                                                                              <  1:183686‑M1/34‑1 (MQ=255)                                  cTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGc                                                                                                              <  1:21193/149‑1 (MQ=255)                                  cTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGc                                                                                                              >  6:280174/1‑149 (MQ=255)                                      cgctgatcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCgg                                                                                                                                         <  6:172645‑M1/7‑1 (MQ=255)                                      cgctgatcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCgg                                                                                                                                         >  5:172645‑M1/112‑118 (MQ=255)                                           gCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                      <  6:163825/148‑1 (MQ=255)                                           atcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTc                                                                                                       >  2:183686‑M1/107‑147 (MQ=255)                                            cAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCa                                                                                                    <  2:141969/149‑1 (MQ=255)                                             aaTCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                   >  6:258560/1‑149 (MQ=255)                                                     tCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGaa                                                                                           <  8:106355/149‑1 (MQ=255)                                                          cAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAAcagca                                                                                      <  7:289691/149‑1 (MQ=255)                                                               ccGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGcttc                                                                                 <  5:258560/149‑1 (MQ=255)                                                               ccGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGcttc                                                                                 <  2:130966/149‑1 (MQ=255)                                                                  gCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGcc                                                                                                 >  8:265577/1‑130 (MQ=255)                                                                  gCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGcc                                                                                                 <  7:265577/130‑1 (MQ=255)                                                                       tCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCTACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCgg                                                                         >  2:187842/1‑149 (MQ=255)                                                                            ttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGcc                                                                                                             >  4:145487‑M1/74‑108 (MQ=255)                                                                            ttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGcc                                                                                                             <  3:145487‑M1/35‑1 (MQ=255)                                                                                aGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCca                                                                <  1:162993/149‑1 (MQ=255)                                                                                   cGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACAt                                                             <  5:322791/149‑1 (MQ=255)                                                                                        gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                      >  5:51144/1‑103 (MQ=255)                                                                                        gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                      <  6:51144/103‑1 (MQ=255)                                                                                        gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAgg                                                        >  3:184450/1‑149 (MQ=255)                                                                                           gTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGt                                                       >  8:69890/1‑147 (MQ=255)                                                                                           gTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGa                                                     <  3:240487/149‑1 (MQ=255)                                                                                                ccaccaGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACt                                                                                                        >  3:9665/1‑93 (MQ=255)                                                                                                ccaccaGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACt                                                                                                        <  4:9665/93‑1 (MQ=255)                                                                                                         gcTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAgg                                       >  1:239944/1‑149 (MQ=255)                                                                                                             cACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTgg                                   >  2:1918/1‑149 (MQ=255)                                                                                                             cACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTg                                    <  5:280174/148‑1 (MQ=255)                                                                                                              aCGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGc                                  >  7:206571/1‑149 (MQ=255)                                                                                                                 gccTGGTTCTCGGGTTACTGCAGCAGGGACCCGTCCAGTTCGGCGTCTTGGTTCCACTCACGCCTCTGGCCGAAGTCGCTGCCCATGAACCGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGaa                               <  4:248015/148‑1 (MQ=255)                                                                                                                            gggATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGc                    >  6:324018/1‑149 (MQ=255)                                                                                                                                   tGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCGGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGcc             >  7:170139/1‑149 (MQ=255)                                                                                                                                     cagcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCgg           >  6:28933/1‑149 (MQ=255)                                                                                                                                     cagcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCgg           <  7:69890/149‑1 (MQ=255)                                                                                                                                      agcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                   <  6:145258/60‑1 (MQ=255)                                                                                                                                      agcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                   >  5:145258/1‑60 (MQ=255)                                                                                                                                          ggTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATc      >  2:28595/1‑149 (MQ=255)                                                                                                                                              ccagtccagtTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGt  <  5:324018/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CTGCGCGTCGTCACCGATCAACCACTGGAAACCCTGCGGCTGGCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGT  >  NC_002947/4578176‑4578465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.