New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4578324 =	47 (0.930)	4 (0.080)	4/242	NT	10.1%	coding (1787/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4578364 =	27 (0.570)					coding (1747/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme

GCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCCGTGCACCACCTCATCATGGGAAATGGG  >  NC_002947/4578218‑4578511                                                                                                                                                   |                                                                                                                                                    gCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                                                                    <  6:163825/148‑1 (MQ=255) atcgacaagatgcccggcgaccgctggcagaagttcgccaacctgcgtgcctacctcaccttcatgtgggcacacccgggcaagaagctgctgttcatgggctgcgAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTc                                                                                                                                                     >  2:183686‑M1/107‑147 (MQ=255)  cAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCa                                                                                                                                                  <  2:141969/149‑1 (MQ=255)   aaTCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                                                                 >  6:258560/1‑149 (MQ=255)           tCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGaa                                                                                                                                         <  8:106355/149‑1 (MQ=255)                cAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAAcagca                                                                                                                                    <  7:289691/149‑1 (MQ=255)                     ccGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGcttc                                                                                                                               <  5:258560/149‑1 (MQ=255)                     ccGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGcttc                                                                                                                               <  2:130966/149‑1 (MQ=255)                        gCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGcc                                                                                                                                               <  7:265577/130‑1 (MQ=255)                        gCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGcc                                                                                                                                               >  8:265577/1‑130 (MQ=255)                             tCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCTACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCgg                                                                                                                       >  2:187842/1‑149 (MQ=255)                                      aGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCca                                                                                                              <  1:162993/149‑1 (MQ=255)                                         cGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACAt                                                                                                           <  5:322791/149‑1 (MQ=255)                                              gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                                                                    <  6:51144/103‑1 (MQ=255)                                              gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCg                                                                                                                                                    >  5:51144/1‑103 (MQ=255)                                              gAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAgg                                                                                                      >  3:184450/1‑149 (MQ=255)                                                 gTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGt                                                                                                     >  8:69890/1‑147 (MQ=255)                                                 gTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGa                                                                                                   <  3:240487/149‑1 (MQ=255)                                                               gcTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAgg                                                                                     >  1:239944/1‑149 (MQ=255)                                                                   cACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTgg                                                                                 >  2:1918/1‑149 (MQ=255)                                                                   cACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTg                                                                                  <  5:280174/148‑1 (MQ=255)                                                                    aCGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGc                                                                                >  7:206571/1‑149 (MQ=255)                                                                       gccTGGTTCTCGGGTTACTGCAGCAGGGACCCGTCCAGTTCGGCGTCTTGGTTCCACTCACGCCTCTGGCCGAAGTCGCTGCCCATGAACCGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGaa                                                                             <  4:248015/148‑1 (MQ=255)                                                                                  gggATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGc                                                                  >  6:324018/1‑149 (MQ=255)                                                                                         tGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCGGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGcc                                                           >  7:170139/1‑149 (MQ=255)                                                                                           cagcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCgg                                                         <  7:69890/149‑1 (MQ=255)                                                                                           cagcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCgg                                                         >  6:28933/1‑149 (MQ=255)                                                                                            agcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                                                                 >  5:145258/1‑60 (MQ=255)                                                                                            agcagGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAg                                                                                                                                                 <  6:145258/60‑1 (MQ=255)                                                                                                ggTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATc                                                    >  2:28595/1‑149 (MQ=255)                                                                                                    ccagtccagtTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGt                                                <  5:324018/149‑1 (MQ=255)                                                                                                          gagttcggccagtggcgtgagtggaaccacgacgccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGAt                                            >  2:183686‑M2/42‑147 (MQ=255)                                                                                                             TTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAACGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGc                                        <  6:63017‑M1/148‑1 (MQ=255)                                                                                                                ggccagtggcgtgagtggaaccacgacgccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGaa                                                                             <  3:145487‑M2/73‑1 (MQ=255)                                                                                                                ggccagtggcgtgagtggaaccacgacgccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGaa                                                                             >  4:145487‑M2/36‑108 (MQ=255)                                                                                                                 gccagtggcgtgagtggaaccacgacgccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATg                                   <  1:183686‑M2/115‑1 (MQ=255)                                                                                                                    tcgtGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCtt                                <  5:28933/149‑1 (MQ=255)                                                                                                                       tGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCTGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGcc                             >  1:227806/1‑149 (MQ=255)                                                                                                                                 cACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCCGTGCaccacc                   >  5:53046/1‑149 (MQ=255)                                                                                                                                    gCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCGGTGCACCACCtca                >  1:64417/1‑149 (MQ=255)                                                                                                                                       aCTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATTAGCGAATGCTTGCCGTGCACCACCtcatca             <  1:28595/149‑1 (MQ=255)                                                                                                                                          ggCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATg                                   >  4:97517/1‑124 (MQ=255)                                                                                                                                          ggCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATg                                   <  3:97517/124‑1 (MQ=255)                                                                                                                                            ccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCg                                       <  6:172645‑M2/111‑1 (MQ=255)                                                                                                                                            ccgaactCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCg                                       >  5:172645‑M2/8‑118 (MQ=255)                                                                                                                                                actCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCCGTGCACCACCTCATCATGGGAAATg    <  2:64417‑M2/146‑1 (MQ=255)                                                                                                                                                  tCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCCGTGCACCACCTCATCATGGGAAATggg  >  7:13937‑M2/2‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCAATCCTGCTCGTGCAACGCCGGCTCTTCGCGGTACAGGCGGTTGAGGTCGCCCACCAGGCGCTGCACGCCCTGGTGCTCGGGATACTGCAGCAGGTACCAGTCCAGTTCGGCGTCGTGGTTCCACTCACGCCACTGGCCGAACTCGCAGCCCATGAACAGCAGCTTCTTGCCCGGGTGTGCCCACATGAAGGTGAGGTAGGCACGCAGGTTGGCGAACTTCTGCCAGCGGTCGCCGGGCATCTTGTCGATCAGCGAATGCTTGCCGTGCACCACCTCATCATGGGAAATGGG  >  NC_002947/4578218‑4578511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.