New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5629790 =	45 (0.890)	5 (0.100)	3/246	NT	10.6%	coding (476/1629 nt)	putP	sodium/L‑proline transporter
	?	NC_002947	5629844 =	41 (0.850)					coding (422/1629 nt)	putP	sodium/L‑proline transporter

TACGACATGCCGAAGGTGCTCTCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGCAGGCCCA  >  NC_002947/5629643‑5629937                                                                                                                                                    |                                                                                                                                                    tACGACATGCCGAAGGTGCTCTCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCgg                                                                                                                                                    <  1:304642/149‑1 (MQ=255) cgtggttaccgcgctgtctgccggtgcctccgacatgagtggctggctgctgatgggcctgcccggtgccatctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtgg                                                                                                                                                    <  5:196472‑M1/2‑1 (MQ=255)  gtggttaccgcgctgtctgccggtgcctccgacatgagtggctggctgctgatgggcctgcccggtgccatctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGc                                                                                                                                                   >  6:196472‑M1/147‑149 (MQ=255)    ggttaccgcgctgtctgccggtgcctccgacatgagtggctggctgctgatgggcctgcccggtgccatctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAg                                                                                                                                                 <  4:121779‑M1/5‑1 (MQ=255)     aCATGCCGAAGGTGCTCTCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAgg                                                                                                                                                >  3:90583/1‑149 (MQ=255)          cgcgctgtctgccggtgcctccgacatgagtggctggctgctgatgggcctgcccggtgccatctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAg                                                                                                                                           <  7:211653‑M1/11‑1 (MQ=255)              aGGTGCTCTCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGcgcg                                                                                                                                       <  4:179838/149‑1 (MQ=255)                   ctctCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCAcc                                                                                                                                  <  2:212520/149‑1 (MQ=255)                   ctctCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCAc                                                                                                                                   >  3:110109/1‑148 (MQ=255)                     ctcGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCAt                                                                                                                                <  7:212859/149‑1 (MQ=255)                      tcGAACAGAAGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCAtt                                                                                                                               >  4:71275/1‑149 (MQ=255)                        gAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCAtt                                                                                                                               <  3:242531/147‑1 (MQ=255)                             gACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCg                                                                                                                        <  2:207032/149‑1 (MQ=255)                              aCGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAggg                                                                                                                                               >  6:111880/1‑125 (MQ=255)                              aCGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAggg                                                                                                                                               <  5:111880/125‑1 (MQ=255)                                     ccGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCAc                                                                                                                <  4:276146/149‑1 (MQ=255)                                      cGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCAcg                                                                                                               >  5:121829/1‑149 (MQ=255)                                         ccACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACgcgc                                                                                                            <  4:90583/149‑1 (MQ=255)                                          cACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCCcgcg                                                                                                             >  8:165173/1‑147 (MQ=255)                                                 ccGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGc                                                                                                     <  4:110109/148‑1 (MQ=255)                                                  cGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCAt                                                                                                                                >  4:48239/1‑120 (MQ=255)                                                  cGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCAt                                                                                                                                <  3:48239/120‑1 (MQ=255)                                                        ggcctgcccggtgccatctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCAc                                                                                              >  8:211653‑M1/93‑148 (MQ=255)                                                               gATGTTGAAGAACACCAGGATGACTATGGCTGAAATGATACGCAGCAGACCGCTATTGTGTTCGTAACGTCTGGAGAAGTAGTGCTGCAGGGTCAGAGCGTGACGATTGTGTTCTGTCTGCACGCGCAGGCGTCCTGCCACGAACAGc                                                                                       <  5:227880/148‑1 (MQ=255)                                                                  ggTGAAGAACCCCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGt                                                                                   >  2:16893/1‑149 (MQ=255)                                                                  ggTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGt                                                                                   >  6:287517/1‑149 (MQ=255)                                                                    tGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCTGCCTGCCACGAACAGCCAGTTc                                                                                 <  3:71275/149‑1 (MQ=255)                                                                     gaagaaCACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAgc                                                                                                                                          >  1:9625/1‑91 (MQ=255)                                                                     gaagaaCACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAgc                                                                                                                                          <  2:9625/91‑1 (MQ=255)                                                                        tctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGaa                                                                                           <  4:198641‑M1/59‑1 (MQ=255)                                                                        tctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGaa                                                                                           >  3:198641‑M1/77‑135 (MQ=255)                                                                        tctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGaa                                                                                           <  6:288225‑M1/59‑1 (MQ=255)                                                                        tctacttcgcgggcctgtccgaggcctggatcgccatcggcctgacagtgggtgcctacctgaactggctgttcgtGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGaa                                                                                           >  5:288225‑M1/77‑135 (MQ=255)                                                                              cAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCa                                                                                     >  7:114224/1‑135 (MQ=255)                                                                                   tGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGTCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCCCGCGCAGCCGGCCTGCACCGCACAGCACGGTCCGGTAGGCAACCACt                                                                  >  6:227681/1‑149 (MQ=255)                                                                                    gACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTg                                                                 >  8:26525/1‑149 (MQ=255)                                                                                      cGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGt                                                                >  2:121680/1‑148 (MQ=255)                                                                                        aTGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAg                                                             <  6:121829/149‑1 (MQ=255)                                                                                         tGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAgg                                                            >  5:168987/1‑149 (MQ=255)                                                                                             ggAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGa                                                        >  1:47737/1‑149 (MQ=255)                                                                                             ggAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGa                                                        >  5:39686/1‑149 (MQ=255)                                                                                               aaaTGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATg                                                      <  6:168987/149‑1 (MQ=255)                                                                                                      aCGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATc                                                >  5:282780/1‑148 (MQ=255)                                                                                                         cagcagCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCa                                                                    >  1:254815/1‑125 (MQ=255)                                                                                                         cagcagCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCa                                                                    <  2:254815/125‑1 (MQ=255)                                                                                                                ccGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGa                                     >  6:52367/1‑149 (MQ=255)                                                                                                                  gCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCGCGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGa                                     >  5:189300/1‑147 (MQ=255)                                                                                                                    tATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAgg                                 >  4:52796/1‑149 (MQ=255)                                                                                                                      ttGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAgg                                 <  5:52367/147‑1 (MQ=255)                                                                                                                         tCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATgg                                                     >  4:227247/1‑124 (MQ=255)                                                                                                                         tCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATgg                                                     <  3:227247/124‑1 (MQ=255)                                                                                                                              gAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGt                       <  6:39686/149‑1 (MQ=255)                                                                                                                                             gtagtCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCggg          >  2:132176/1‑147 (MQ=255)                                                                                                                                              tagtCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGc         <  5:259480/147‑1 (MQ=255)                                                                                                                                              tagtCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGc         >  6:259480/1‑147 (MQ=255)                                                                                                                                                 tCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGCAGGcc    >  4:113042/1‑149 (MQ=255)                                                                                                                                                   cGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGCAGGCCCa  >  2:304621/1‑149 (MQ=255)                                                                                                                                                    GGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAg                        >  6:218352‑M1/1‑126 (MQ=255)                                                                                                                                                    GGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAg                        <  5:218352‑M1/126‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TACGACATGCCGAAGGTGCTCTCGAACAGACGGGCACCGGCCACGATGCCGGAGGCACAGTAGATGGTGAAGAACACCAGGATGACGATGGCGGAAATGATACGCAGCAGCCCGCTATTGTCTTCGAAACGGCTGGAGAAGTAGTCCGGCAGGGTCAGCGCGTCACCATTGTGTTCGGTCTGCACGCGCAGCCGGCCTGCCACGAACAGCCAGTTCAGGTAGGCACCCACTGTCAGGCCGATGGCGATCCAGGCCTCGGACAGGCCCGCGAAGTAGATGGCACCGGGCAGGCCCA  >  NC_002947/5629643‑5629937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.