New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5807429 =	43 (0.850)	3 (0.060)	3/248	NT	6.6%	coding (2018/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
	?	NC_002947	5807464 =	43 (0.890)					coding (2053/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase

GCACTGCGGCCATGCCAGGCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAA  >  NC_002947/5807288‑5807575                                                                                                                                              |                                                                                                                                                   gCACTGCGGCCATGCCAGGCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCAcc                                                                                                                                             <  3:261724/149‑1 (MQ=255)          ccATGCCAGGCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCgg                                                                                                                                    >  4:13390/1‑149 (MQ=255)                cAGGCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCCTGCTGCAGGACGTGATCAAGCGCGGCACCGGCAGCCGGCCGCTg                                                                                                                              >  1:299153/1‑149 (MQ=255)                   gCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGcc                                                                                                                           >  4:234222/1‑149 (MQ=255)                         cACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGc                                                                                                                     >  5:211451/1‑149 (MQ=255)                          aCCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCt                                                                                                                               >  6:103807/1‑138 (MQ=255)                          aCCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCt                                                                                                                               <  5:103807/138‑1 (MQ=255)                               ttccggttggtcgaagccgacccaaacggtagtcacgtaatcggcgttgtaaccggagaaccaggcgtccttggattcgttggtcgtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCAc                                                                                                                <  4:208015‑M1/37‑1 (MQ=255)                               ttccggttggtcgaagccgacccaaacggtagtcacgtaatcggcgttgtaaccggagaaccaggcgtccttggattcgttggtcgtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCAc                                                                                                                >  3:208015‑M1/112‑148 (MQ=255)                                        gtcagGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTgg                                                                                                                             <  1:221438/126‑1 (MQ=255)                                        gtcagGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTgg                                                                                                                             >  2:221438/1‑126 (MQ=255)                                         tcagGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCgg                                                                                                     <  3:234222/149‑1 (MQ=255)                                            ggTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                  <  3:13390/149‑1 (MQ=255)                                                  cgcgGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACgg                                                                                            >  6:178666/1‑149 (MQ=255)                                                      gCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTAc                                                                                        >  7:14146/1‑149 (MQ=255)                                                             aaGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAAc                                                                                 >  5:190699/1‑149 (MQ=255)                                                               gcgcCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGa                                                                               <  5:216627/149‑1 (MQ=255)                                                                  ccGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGATGGGTACGACCAACGAATc                                                                            >  7:19155/1‑149 (MQ=255)                                                                     gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATcc                                                                           >  1:158778/1‑147 (MQ=255)                                                                     gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCaa                                                                         <  6:190699/149‑1 (MQ=255)                                                                     gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCaa                                                                         <  8:282407/149‑1 (MQ=255)                                                                        gTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGa                                                                      >  4:146736/1‑149 (MQ=255)                                                                           gCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGc                                                                   <  3:146736/149‑1 (MQ=255)                                                                           gCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGc                                                                   <  2:261812/149‑1 (MQ=255)                                                                             cGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                  >  7:58988/1‑116 (MQ=255)                                                                             cGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                  <  8:58988/116‑1 (MQ=255)                                                                                     tcatcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTcc                                                         >  6:204101/1‑149 (MQ=255)                                                                                       atcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGATGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCg                                                        <  8:19155/148‑1 (MQ=255)                                                                                       atcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCgg                                                       >  1:55171/1‑149 (MQ=255)                                                                                               gCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACg                                               >  6:200680/1‑149 (MQ=255)                                                                                                     caccTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGAc                                                                                              >  4:283353/1‑96 (MQ=255)                                                                                                      accTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCg                                            <  5:267101/145‑1 (MQ=255)                                                                                                      accTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCg                                            >  6:267101/1‑145 (MQ=255)                                                                                                      accCACAACCTCACCCGCACGCGGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAACACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTa                                        <  6:211451/149‑1 (MQ=255)                                                                                                       ccTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACAAGGCGCGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTAc                                       >  5:179043/1‑149 (MQ=255)                                                                                                           cATCCTCACCAGCATGCTGGAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGt                                     <  2:299153/147‑1 (MQ=255)                                                                                                           cATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGa                                   <  2:55171/149‑1 (MQ=255)                                                                                                            aTCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGAc                                  >  2:6943/1‑149 (MQ=255)                                                                                                              ccTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTa                                >  6:83699/1‑149 (MQ=255)                                                                                                                    gtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCGGGCGGGCAAGACGGGt                                                                                          <  8:183732‑M1/59‑1 (MQ=255)                                                                                                                    cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                          <  5:178666/149‑1 (MQ=255)                                                                                                                    cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                          <  8:14146/149‑1 (MQ=255)                                                                                                                    cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                          >  7:299428/1‑149 (MQ=255)                                                                                                                             gcAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAAt                                                                             >  6:142213/1‑89 (MQ=255)                                                                                                                             gcAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAAt                                                                             <  5:142213/89‑1 (MQ=255)                                                                                                                               agtaCGTGATCAAGCGCGGCTCCGGCCGCCGGGCGCTGTCCTTGGGCCGCTCCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTc               <  6:179043/146‑1 (MQ=255)                                                                                                                                          aaGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCgg     >  2:171682/1‑148 (MQ=255)                                                                                                                                            gcgcGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaaa  <  5:83699/149‑1 (MQ=255)                                                                                                                                            gcgcGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGAAAGCCGGGTACGACCCACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACCTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaaa  >  1:158132/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   GCACTGCGGCCATGCCAGGCGAGGCACCTTCTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAA  >  NC_002947/5807288‑5807575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.