New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5807429 =	43 (0.850)	3 (0.060)	3/248	NT	6.6%	coding (2018/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
	?	NC_002947	5807464 =	43 (0.890)					coding (2053/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase

CTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAATATGGCGGGA  >  NC_002947/5807318‑5807602                                                                                                                                                   |                                                                                                                                           ttccggttggtcgaagccgacccaaacggtagtcacgtaatcggcgttgtaaccggagaaccaggcgtccttggattcgttggtcgtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCAc                                                                                                                                           <  4:208015‑M1/37‑1 (MQ=255) ttccggttggtcgaagccgacccaaacggtagtcacgtaatcggcgttgtaaccggagaaccaggcgtccttggattcgttggtcgtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCAc                                                                                                                                           >  3:208015‑M1/112‑148 (MQ=255)           tcagGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCgg                                                                                                                                <  3:234222/149‑1 (MQ=255)              ggTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                                             <  3:13390/149‑1 (MQ=255)                    cgcgGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACgg                                                                                                                       >  6:178666/1‑149 (MQ=255)                        gCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTAc                                                                                                                   >  7:14146/1‑149 (MQ=255)                               aaGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAAc                                                                                                            >  5:190699/1‑149 (MQ=255)                                 gcgcCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGa                                                                                                          <  5:216627/149‑1 (MQ=255)                                    ccGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGATGGGTACGACCAACGAATc                                                                                                       >  7:19155/1‑149 (MQ=255)                                       gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATcc                                                                                                      >  1:158778/1‑147 (MQ=255)                                       gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCaa                                                                                                    <  8:282407/149‑1 (MQ=255)                                       gCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCaa                                                                                                    <  6:190699/149‑1 (MQ=255)                                          gTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGa                                                                                                 >  4:146736/1‑149 (MQ=255)                                             gCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGc                                                                                              <  2:261812/149‑1 (MQ=255)                                             gCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGc                                                                                              <  3:146736/149‑1 (MQ=255)                                               cGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                                             <  8:58988/116‑1 (MQ=255)                                               cGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCa                                                                                                                             >  7:58988/1‑116 (MQ=255)                                                       tcatcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTcc                                                                                    >  6:204101/1‑149 (MQ=255)                                                         atcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGATGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCg                                                                                   <  8:19155/148‑1 (MQ=255)                                                         atcGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCgg                                                                                  >  1:55171/1‑149 (MQ=255)                                                                 gCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACg                                                                          >  6:200680/1‑149 (MQ=255)                                                                       caccTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGAc                                                                                                                         >  4:283353/1‑96 (MQ=255)                                                                        accTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCg                                                                       <  5:267101/145‑1 (MQ=255)                                                                        accTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCg                                                                       >  6:267101/1‑145 (MQ=255)                                                                        accCACAACCTCACCCGCACGCGGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAACACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTa                                                                   <  6:211451/149‑1 (MQ=255)                                                                         ccTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACAAGGCGCGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTAc                                                                  >  5:179043/1‑149 (MQ=255)                                                                             cATCCTCACCAGCATGCTGGAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGt                                                                <  2:299153/147‑1 (MQ=255)                                                                             cATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGa                                                              <  2:55171/149‑1 (MQ=255)                                                                              aTCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGAc                                                             >  2:6943/1‑149 (MQ=255)                                                                                ccTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTa                                                           >  6:83699/1‑149 (MQ=255)                                                                                      gtacccgtcttgcccgccaggtcggtGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCGGGCGGGCAAGACGGGt                                                                                                                     <  8:183732‑M1/59‑1 (MQ=255)                                                                                      cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                                                     >  7:299428/1‑149 (MQ=255)                                                                                      cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                                                     <  5:178666/149‑1 (MQ=255)                                                                                      cAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGttt                                                     <  8:14146/149‑1 (MQ=255)                                                                                        acccgtcttgcccgcccggtcggtgcggcccaaggccagcgcccggcggccggtgccgcACCGACCTGGCGGGCAAGACGGGTAc                                                                                                                   <  8:183732‑M2/26‑1 (MQ=255)                                                                                               gcAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAAt                                                                                                        >  6:142213/1‑89 (MQ=255)                                                                                               gcAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAAt                                                                                                        <  5:142213/89‑1 (MQ=255)                                                                                                 agtaCGTGATCAAGCGCGGCTCCGGCCGCCGGGCGCTGTCCTTGGGCCGCTCCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTc                                          <  6:179043/146‑1 (MQ=255)                                                                                                            aaGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCgg                                >  2:171682/1‑148 (MQ=255)                                                                                                              gtgcggcccaaggccagcgcccggcggccggtgccgcACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaa                              <  4:208015‑M2/111‑1 (MQ=255)                                                                                                              gtgcggcccaaggccagcgcccggcggccggtgccgcACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaa                              >  3:208015‑M2/38‑148 (MQ=255)                                                                                                              gcgcGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaaa                             <  5:83699/149‑1 (MQ=255)                                                                                                              gcgcGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGAAAGCCGGGTACGACCCACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACCTGACTACCGTTTGGGTCGGCTTCGACCAACCGGaaa                             >  1:158132/1‑149 (MQ=255)                                                                                                                    CACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCg                       >  6:31401‑M1/1‑149 (MQ=255)                                                                                                                    CACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCg                       <  5:31401‑M1/149‑1 (MQ=255)                                                                                                                           cgccgGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAAc                                   <  4:16807/130‑1 (MQ=255)                                                                                                                           cgccgGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAAc                                   >  3:16807/1‑130 (MQ=255)                                                                                                                                   gcTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCAAAGGACGCCTGGTTCTCCCGATACAACCCCGATTACGTGACTAACGTTTGGCTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAataag        >  6:31876/1‑147 (MQ=255)                                                                                                                                     tGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCg                                               <  7:118330/108‑1 (MQ=255)                                                                                                                                     tGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCg                                               >  8:118330/1‑108 (MQ=255)                                                                                                                                       gCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAATATGGCgg    <  5:200680/149‑1 (MQ=255)                                                                                                                                         cTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAATATGGCGGGa  >  2:37412/1‑149 (MQ=255)                                                                                                                                         cTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAATATGGCGGGa  >  4:111939/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                           CTGCCTTCAGTCAGGTGGCCGCGGCATCGCAAGCGCCGGCAGTGGCCGAACAGATCATCGACGGGCGTACCACCTACATCCTCACCAGCATGCTGCAGGACGTGATCAAGCGCGGCACCGGCCGCCGGGCGCTGGCCTTGGGCCGCACCGACCTGGCGGGCAAGACGGGTACGACCAACGAATCCAAGGACGCCTGGTTCTCCGGTTACAACGCCGATTACGTGACTACCGTTTGGGTCGGCTTCGACCAACCGGAAACCCTCGGCCGCCGCGAATATGGCGGGA  >  NC_002947/5807318‑5807602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.