New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 467139	48 (0.950)	3 (0.060)	3/246	NT	6.8%	noncoding (58/77 nt)	PP_t71	tRNA‑Met
	?	NC_002947	= 467161	37 (0.770)					noncoding (36/77 nt)	PP_t71	tRNA‑Met

CTTCCAAGGTCATGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCTGGTGGTAGCGGGAGGC  >  NC_002947/467013‑467307                                                                                                                                                     |                                                                                                                                                   cTTCCAAGGTCATGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTAt                                                                                                                                                    <  5:283350/149‑1 (MQ=255)     cAAGGTCATGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCGTGGTCGTATCTGGTGGGCCCACACGGACGCGAACCGTGGACCAAAGGAGTATgagt                                                                                                                                                <  7:121465‑M2/149‑5 (MQ=255)            aTGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGc                                                                                                                                         <  4:158450/149‑1 (MQ=255)             tGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGct                                                                                                                                        >  5:51889/1‑149 (MQ=255)                gcTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATga                                                                                                                                                  >  8:51210‑M2/1‑134 (MQ=255)                gcTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATga                                                                                                                                                  <  7:51210‑M2/136‑3 (MQ=255)                 cTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTaa                                                                                                                                    <  1:119522/149‑1 (MQ=255)                 cTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTaa                                                                                                                                    <  2:243514/149‑1 (MQ=255)                         cgctgcgctgGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACt                                                                                                                              >  7:303899/1‑147 (MQ=255)                           ctgcgctgGATGTACGCGCCCCTGACCATTTATTTCTTGCGTGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGc                                                                                                                          <  6:259732/149‑1 (MQ=255)                             gcgctgGATGTACGCGCCCCTAACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCta                                                                                                                        >  6:159272/1‑149 (MQ=255)                                       tACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCa                                                                                                              <  2:200512/149‑1 (MQ=255)                                        aCGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGTTTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCt                                                                                                                >  2:99610/1‑146 (MQ=255)                                        aCGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCct                                                                                                                                             <  3:66685/117‑1 (MQ=255)                                        aCGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCct                                                                                                                                             >  4:66685/1‑117 (MQ=255)                                        aCGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCa                                                                                                              <  1:99610/148‑1 (MQ=255)                                         cgcgCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGt                                                                                                            <  6:148827/149‑1 (MQ=255)                                          gcgcCCCTGGCCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGt                                                                                                            >  8:258815/1‑148 (MQ=255)                                                  gACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCg                                                                                                   >  5:268262/1‑149 (MQ=255)                                                     cATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGAt                                                                                                <  4:10707/149‑1 (MQ=255)                                                        ttatttCTTGCGAGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTAt                                                                                                                                                    <  6:208477/94‑1 (MQ=255)                                                        ttatttCTTGCGAGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTAt                                                                                                                                                    >  5:208477/1‑94 (MQ=255)                                                                  cGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGtt                                                                                   >  4:128441/1‑149 (MQ=255)                                                                     gCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGa                                                                                                 <  6:194439/132‑1 (MQ=255)                                                                     gCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGa                                                                                                 >  5:194439/1‑132 (MQ=255)                                                                     gCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCg                                                                                <  8:303899/149‑1 (MQ=255)                                                                       aTGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCa                                                                              >  2:224638/1‑149 (MQ=255)                                                                         gacaaaGCCGCGCGATTGCGCGGCTTTTTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCAcc                                                                            >  4:294845/4‑149 (MQ=255)                                                                              aGCCGCGCGATTGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGc                                                                       >  3:231888/1‑149 (MQ=255)                                                                                 cgcgCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGCACCGTGGACCAAAGGATTTTGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCAt                                                                    <  8:121465/149‑1 (MQ=255)                                                                                 cgcgCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCAt                                                                    <  7:258815/149‑1 (MQ=255)                                                                                  gcgcAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATc                                                                   <  6:268262/149‑1 (MQ=255)                                                                                  gcgcAACCGCGCGCCTTTGTCGTATCTGGTGGGCCCACACGGTCTCGAACCGTGGCCCAAAGGATTATGCGTCCTCTGCTCTAACCAACTGACATAAAGGCCCACACTAAGTGGGCGGATTATAACGAGGGTTACGCACCTGTGCCaac                                                                   >  7:267601/1‑147 (MQ=255)                                                                                      aaTCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGaa                                                               <  1:224638/149‑1 (MQ=255)                                                                                        ttgcgcgGCTTTTTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAg                                                             <  3:294845/147‑1 (MQ=255)                                                                                                   tGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGaaa                                                              <  8:224550/137‑1 (MQ=255)                                                                                                   tGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGaaa                                                              >  7:224550/1‑137 (MQ=255)                                                                                                       gTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTAt                                              >  2:247404/1‑149 (MQ=255)                                                                                                                    ccACACGGACTCGAACCGTGGACCAAAGGATTATgagtccgtgtgggcccaccagatacgacaaagccgcgcgattgcgcggctttttcatgcccgcaagaaataaatggtcaggggcgcgtacatccagcgcagcggcgccgagcgca                                 <  5:214452‑M2/149‑116 (MQ=255)                                                                                                                    ccACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAAcgcg                                 <  3:128441/149‑1 (MQ=255)                                                                                                                      acacGGACTCGAACCGTGGACCAAAGGATTATgagtccgtgtgggcccaccagatacgacaaagccgc                                                                                                                >  2:254994‑M2/1‑32 (MQ=255)                                                                                                                      acacGGACTCGAACCGTGGACCAAAGGATTATgagtccgtgtgggcccaccagatacgacaaagccgc                                                                                                                <  1:254994‑M2/68‑37 (MQ=255)                                                                                                                        acGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGAGGCcg                             >  5:323154/1‑149 (MQ=255)                                                                                                                             cTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGa                                                                >  2:192725/1‑109 (MQ=255)                                                                                                                             cTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGa                                                                <  1:192725/109‑1 (MQ=255)                                                                                                                                     gTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCtgg                <  5:159272/149‑1 (MQ=255)                                                                                                                                           cAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATACGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCTGGTGGTAg          >  8:200782/1‑149 (MQ=255)                                                                                                                                            aaaGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCcgc                            >  2:61192/1‑130 (MQ=255)                                                                                                                                            aaaGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCcgc                            <  1:61192/130‑1 (MQ=255)                                                                                                                                                 aTTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCTGGTGGTAGCGGGAg    >  6:287840/1‑149 (MQ=255)                                                                                                                                                    aTGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCTGGTGGTAGCGGGAGGc  <  5:287840/148‑1 (MQ=255)                                                                                                                                                     tGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTa                                               <  2:150974/102‑1 (MQ=255)                                                                                                                                                     tGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTa                                               >  1:150974/1‑102 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTTCCAAGGTCATGCGCTCGGCGCCGCTGCGCTGGATGTACGCGCCCCTGACCATTTATTTCTTGCGGGCATGAAAAAGCCGCGCAATCGCGCGGCTTTGTCGTATCTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCTCAGTAAGTGGGCGGATTATAACGAGGGTTTCGCACCTGTGCCATCTGAAAGATCCGATAGTGCTATGCGAAGAAACGCGGCCGCGAATTCCTCTGGTGGTAGCGGGAGGC  >  NC_002947/467013‑467307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.